SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5nava_ (5nav A:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2081496Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 2083716Family c.1.8.0: automated matches [191314] (1 protein)
    not a true family
  6. 2083717Protein automated matches [190075] (89 species)
    not a true protein
  7. 2083972Species Lactobacillus plantarum [TaxId:1590] [189663] (4 PDB entries)
  8. 2293897Domain d5nava_: 5nav A: [337198]
    automated match to d2xhya_

Details for d5nava_

PDB Entry: 5nav (more details), 2.3 Å

PDB Description: crystal structure of the double mutant (cys211ser/cys292ser) 6- phospho-b-d-glucosidase from lactobacillus plantarum
PDB Compounds: (A:) beta-galactosidase

SCOPe Domain Sequences for d5nava_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5nava_ c.1.8.0 (A:) automated matches {Lactobacillus plantarum [TaxId: 1590]}

SCOPe Domain Coordinates for d5nava_:

Click to download the PDB-style file with coordinates for d5nava_.
(The format of our PDB-style files is described here.)

Timeline for d5nava_:

  • d5nava_ appears in periodic updates to SCOPe 2.06 starting on 2017-08-03