SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Lactobacillus brevis [TaxId: 1580]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2130990Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
    main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
  4. 2130991Superfamily c.67.1: PLP-dependent transferases [53383] (10 families) (S)
  5. 2132229Family c.67.1.0: automated matches [191328] (1 protein)
    not a true family
  6. 2132230Protein automated matches [190151] (119 species)
    not a true protein
  7. 2293856Species Lactobacillus brevis [TaxId:1580] [337157] (1 PDB entry)

PDB entry in Species: Lactobacillus brevis [TaxId: 1580]:

More info for Species Lactobacillus brevis [TaxId:1580] from c.67.1.0 automated matches

Timeline for Species Lactobacillus brevis [TaxId:1580] from c.67.1.0 automated matches:

  • Species Lactobacillus brevis [TaxId:1580] from c.67.1.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-08-03