SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5vnqa_ (5vnq A:)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2152584Fold d.2: Lysozyme-like [53954] (1 superfamily)
    common alpha+beta motif for the active site region
  4. 2152585Superfamily d.2.1: Lysozyme-like [53955] (12 families) (S)
  5. 2153717Family d.2.1.3: Phage lysozyme [53981] (4 protein domains)
  6. 2153723Protein Phage T4 lysozyme [53982] (1 species)
  7. 2153724Species Bacteriophage T4 [TaxId:10665] [53983] (567 PDB entries)
    Uniprot P00720
    many mutant structures
  8. 2293838Domain d5vnqa_: 5vnq A: [337139]
    automated match to d1lw9a_
    complexed with cl, dod

Details for d5vnqa_

PDB Entry: 5vnq (more details), 2.2 Å

PDB Description: neutron crystallographic strucutre of perdeuterated t4 lysozyme cysteine-free pseudo-wild type at cryogenic temperature
PDB Compounds: (A:) endolysin

SCOPe Domain Sequences for d5vnqa_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5vnqa_ d.2.1.3 (A:) Phage T4 lysozyme {Bacteriophage T4 [TaxId: 10665]}
mnifemlrideglrlkiykdtegyytigighlltkspslnaakseldkaigrntngvitk
deaeklfnqdvdaavrgilrnaklkpvydsldavrraalinmvfqmgetgvagftnslrm
lqqkrwdeaavnlaksrwynqtpnrakrvittfrtgtwdayknl

SCOPe Domain Coordinates for d5vnqa_:

Click to download the PDB-style file with coordinates for d5vnqa_.
(The format of our PDB-style files is described here.)

Timeline for d5vnqa_:

  • d5vnqa_ appears in periodic updates to SCOPe 2.06 starting on 2017-07-27