Lineage for d5nf6b_ (5nf6 B:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2144291Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 2144292Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 2145531Family c.94.1.0: automated matches [191309] (1 protein)
    not a true family
  6. 2145532Protein automated matches [190039] (138 species)
    not a true protein
  7. 2145930Species Norway rat (Rattus norvegicus) [TaxId:10116] [186759] (101 PDB entries)
  8. 2293758Domain d5nf6b_: 5nf6 B: [337059]
    automated match to d3u92a_
    complexed with 8vn, act, cl, gol, zn

Details for d5nf6b_

PDB Entry: 5nf6 (more details), 2.55 Å

PDB Description: structure of gluk3 ligand-binding domain (s1s2) in complex with cip-as at 2.55 a resolution
PDB Compounds: (B:) Glutamate receptor ionotropic, kainate 3,Glutamate receptor ionotropic, kainate 3

SCOPe Domain Sequences for d5nf6b_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5nf6b_ c.94.1.0 (B:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}
rslivttlleepfvmfrksdrtlygndrfegycidllkelahilgfsyeirlvedgkyga
qddkgqwngmvkelidhkadlavapltithvrekaidfskpfmtlgvsilyrkgtpidsa
ddlakqtkieygavkdgatmtffkkskistfekmwafmsskpsalvknneegiqrtltad
yallmesttieyitqrncnltqigglidskgygigtpmgspyrdkitiailqlqeedklh
imkekwwrgsgc

SCOPe Domain Coordinates for d5nf6b_:

Click to download the PDB-style file with coordinates for d5nf6b_.
(The format of our PDB-style files is described here.)

Timeline for d5nf6b_:

  • d5nf6b_ appears in periodic updates to SCOPe 2.06 starting on 2017-07-27