SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)

Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

Superfamily b.121.2: Group II dsDNA viruses VP [49749] (4 families)

duplication: consists of two domains of this fold packed together like the nucleoplasmin subunits
trimeric; in the trimers, the domains are arranged around pseudo six-fold axis

Family b.121.2.2: Adenovirus hexon [49753] (3 proteins)
each domain is heavily decorated with many insertions
Protein automated matches [336628] (2 species)
not a true protein

Species:

Human adenovirus 5 [TaxId:28285] [336629] (1 PDB entry)
- Domains for 5ldn:
  1. Domain d5ldna1: 5ldn A:7-634 [336630]
    Other proteins in same PDB: d5ldnh_, d5ldnl1, d5ldnl2
    automated match to d1p2za1
  2. Domain d5ldna2: 5ldn A:635-946 [336631]
    Other proteins in same PDB: d5ldnh_, d5ldnl1, d5ldnl2
    automated match to d1p2za2
Human adenovirus c serotype 5 [TaxId:28285] [347256] (1 PDB entry)
- Domain for 5ogi:
  - Domain d5ogia1: 5ogi A:6-634 [347257]
    Other proteins in same PDB: d5ogia2, d5ogib1, d5ogib2, d5ogib3
    automated match to d1p2za1
    complexed with dio, edo, mes, so4

More info for Protein automated matches from b.121.2.2: Adenovirus hexon

Timeline for Protein automated matches from b.121.2.2: Adenovirus hexon:

Protein automated matches from b.121.2.2: Adenovirus hexon first appeared in SCOPe 2.06
Protein automated matches from b.121.2.2: Adenovirus hexon appears in SCOPe 2.07