SCOPe 2.06: Domain d5nema1: 5nem A:1-438

Lineage for d5nema1 (5nem A:1-438)

1. Root: SCOPe 2.06

2. Class b: All beta proteins [48724] (177 folds)

3. Fold b.69: 7-bladed beta-propeller [50964] (15 superfamilies)
   consists of seven 4-stranded beta-sheet motifs; meander

4. Superfamily b.69.8: Integrin alpha N-terminal domain [69318] (2 families)

5. Family b.69.8.1: Integrin alpha N-terminal domain [69319] (2 proteins)

6. Protein automated matches [254690] (1 species)
   not a true protein

7. Species Human (Homo sapiens) [TaxId:9606] [255892] (11 PDB entries)

8. Domain d5nema1: 5nem A:1-438 [335779]
   Other proteins in same PDB: d5nem1_, d5nem3_, d5nema2
   automated match to d1m1xa4
   complexed with ca, man, nag

Details for d5nema1

PDB Entry: 5nem, 3.1 Å

PDB Description: localised reconstruction of alpha v beta 6 bound to foot and mouth disease virus o panasia - pose a.

PDB Compounds: (A:) Integrin alpha-V

SCOPe Domain Sequences for d5nema1:

Sequence, based on SEQRES records:

>d5nema1 b.69.8.1 (A:1-438) automated matches {Human (Homo sapiens) [TaxId: 9606]}
fnldvdspaeysgpegsyfgfavdffvpssrmfllvgapkanttqpgiveggqvlkcdws
strrcqpiefdatgnrdyakddplefkshqwfgasvrskqdkilacaplyhwrtemkqer
epvgtcflqdgtktveyapcrsqdidadgqgfcqggfsidftkadrvllggpgsfywqgq
lisdqvaeivskydpnvysikynnqlatrtaqaifddsylgysvavgdfngdgiddfvsg
vpraartlgmvyiydgknmsslynftgeqmaayfgfsvaatdingddyadvfigaplfmd
rgsdgklqevgqvsvslqrasgdfqttklngfevfarfgsaiaplgdldqdgfndiaiaa
pyggedkkgivyifngrstglnavpsqilegqwaarscppsfgysmkgatdidkngypdl
ivgafgvdrailyrar

Sequence, based on observed residues (ATOM records):

>d5nema1 b.69.8.1 (A:1-438) automated matches {Human (Homo sapiens) [TaxId: 9606]}
fnldvdspaeysgpegsyfgfavdffvpssrmfllvgapkanttqpgiveggqvlkcdws
strrcqpiefdatgnrdyakddplefkshqwfgasvrskqdkilacaplyhwrtemkqer
epvgtcflqdgtktveyapcrsqdidadgqgfcqggfsidftkadrvllggpgsfywqgq
lisdqvaeivskydpnvysikynnqlatrtaqaifddsylgysvavgdfngdgiddfvsg
vpraartlgmvyiydgknmssynftgeqmaayfgfsvaatdingddyadvfigaplfmdr
gsdgklqevgqvsvslqrasgdfqttklngfevfarfgsaiaplgdldqdgfndiaiaap
yggedkkgivyifngrstglnavpsqilegqwaarscppsfgysmkgatdidkngypdli
vgafgvdrailyrar

Timeline for d5nema1:

• d5nema1 is new in SCOPe 2.06-stable
  
• d5nema1 appears in SCOPe 2.07
  
• d5nema1 appears in the current release, SCOPe 2.08