SCOPe 2.08: Domain d5j9rd_: 5j9r D:

Lineage for d5j9rd_ (5j9r D:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.153: Ntn hydrolase-like [56234] (2 superfamilies)
   4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing

4. Superfamily d.153.1: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56235] (8 families)
   N-terminal residue provides two catalytic groups, nucleophile and proton donor

5. Family d.153.1.0: automated matches [191393] (1 protein)
   not a true family

6. Protein automated matches [190509] (19 species)
   not a true protein

7. Species Agrobacterium tumefaciens [TaxId:358] [335588] (1 PDB entry)

8. Domain d5j9rd_: 5j9r D: [335593]
   automated match to d2oqca_

Details for d5j9rd_

PDB Entry: 5j9r, 2.8 Å

PDB Description: structure of penicillin v acylase from agrobacterium tumefaciens

PDB Compounds: (D:) choloylglycine hydrolase

SCOPe Domain Sequences for d5j9rd_:

Sequence, based on SEQRES records:

>d5j9rd_ d.153.1.0 (D:) automated matches {Agrobacterium tumefaciens [TaxId: 358]}
ctrfvyigennqvmtarsmdwktdvgtnlwvfprgmersgeagpnsvkwtskygsviasg
ydvsttdgmneaglaanvlwlvessypdydgkspglsiaawaqyvldnfatveeavrvle
knpfiivtdsvpgeerlatlhlslsdasgdsaiveyidgkqvihhgrqyqvmtnsptfde
qlalnaywtqiggtvmlpgtnrasdrfvrasfyanaipksenpveaiasvfsvirnvsvp
ygittpdqpnisstrwrtvidhkrklyffesaltpnvfwidmtkldlsketgavkkldlg
anqihiysgmaneslkdtkpfkflgl

Sequence, based on observed residues (ATOM records):

>d5j9rd_ d.153.1.0 (D:) automated matches {Agrobacterium tumefaciens [TaxId: 358]}
ctrfvyigennqvmtarsmdwktdvgtnlwvfprgmersgeagpnsvkwtskygsviasg
ydvsttdgmneaglaanvlwlvessypdydgkspglsiaawaqyvldnfatveeavrvle
knpfiivtatlhlslsdasgdsaiveyidgkqvihhgrqyqvmtnsptfdeqlalnaywt
qiggtvmlpgtnrasdrfvrasfyanaipksenpveaiasvfsvirnvsvpygittpdqp
nisstrwrtvidhkrklyffesaltpnvfwidmtkldlsketgavkkldlganqihiysg
maneslkdtkpfkflgl

Timeline for d5j9rd_:

• d5j9rd_ first appeared in SCOPe 2.06
  
• d5j9rd_ appears in SCOPe 2.07