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Lineage for d5ne41_ (5ne4 1:)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2075417Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2075626Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) (S)
  5. 2075627Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 protein domains)
    the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
    there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)
  6. 2075905Protein automated matches [190854] (13 species)
    not a true protein
  7. 2075930Species Foot-and-mouth disease virus [TaxId:12110] [188180] (3 PDB entries)
  8. 2292194Domain d5ne41_: 5ne4 1: [335495]
    automated match to d1fmd1_

Details for d5ne41_

PDB Entry: 5ne4 (more details), 2.3 Å

PDB Description: crystal structure of foot and mouth disease virus o panasia
PDB Compounds: (1:) O PanAsia VP1

SCOPe Domain Sequences for d5ne41_:

Sequence, based on SEQRES records: (download)

>d5ne41_ b.121.4.1 (1:) automated matches {Foot-and-mouth disease virus [TaxId: 12110]}
ttsagesadpvtatvenyggetqvqrrqhtdvsfildrfvkvtpkdqinvldlmqtpaht
lvgallrtatyyfadlevavkhegnltwvpngapetaldnttnptayhkapltrlalpyt
aphrvlatayngnckygeshttnvrgdlqvlaqkaartlptsfnygaikatrvtellyrm
kraetycprpllaihpsearhkqkivap

Sequence, based on observed residues (ATOM records): (download)

>d5ne41_ b.121.4.1 (1:) automated matches {Foot-and-mouth disease virus [TaxId: 12110]}
ttsagesadpvtatvenyggetqvqrrqhtdvsfildrfvkvtpkdqinvldlmqtpaht
lvgallrtatyyfadlevavkhegnltwvpngapetaldnttnptayhkapltrlalpyt
aphrvlatayngrtlptsfnygaikatrvtellyrmkraetycprpllaihpsearhkqk
ivap

SCOPe Domain Coordinates for d5ne41_:

Click to download the PDB-style file with coordinates for d5ne41_.
(The format of our PDB-style files is described here.)

Timeline for d5ne41_:

  • d5ne41_ appears in periodic updates to SCOPe 2.06 starting on 2017-06-15

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Domains from other chains:
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d5ne43_