SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5tjla_ (5tjl A:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2133075Fold c.68: Nucleotide-diphospho-sugar transferases [53447] (1 superfamily)
    3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest
  4. 2133076Superfamily c.68.1: Nucleotide-diphospho-sugar transferases [53448] (20 families) (S)
  5. 2133477Family c.68.1.9: alpha-1,3-galactosyltransferase-like [64131] (4 protein domains)
    automatically mapped to Pfam PF03414
  6. 2133594Protein automated matches [190178] (2 species)
    not a true protein
  7. 2133601Species Human (Homo sapiens) [TaxId:9606] [186910] (68 PDB entries)
  8. 2292141Domain d5tjla_: 5tjl A: [335442]
    automated match to d3zgfa_
    complexed with bga, hg

Details for d5tjla_

PDB Entry: 5tjl (more details), 1.89 Å

PDB Description: crystal structure of gta + a trisaccharide (mercury derivative)
PDB Compounds: (A:) Histo-blood group ABO system transferase

SCOPe Domain Sequences for d5tjla_:

Sequence, based on SEQRES records: (download)

>d5tjla_ c.68.1.9 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
vslprmvypqpkvltpcrkdvlvvtpwlapivwegtfnidilneqfrlqnttigltvfai
kkyvaflklfletaekhfmvghrvhyyvftdqpaavprvtlgtgrqlsvlevraykrwqd
vsmrrmemisdfcerrflsevdylvcvdvdmefrdhvgveiltplfgtlhpgfygssrea
ftyerrpqsqayipkdegdfyylggffggsvqevqrltrachqammvdqangieavwhde
shlnkyllrhkptkvlspeylwdqqllgwpavlrklrftavp

Sequence, based on observed residues (ATOM records): (download)

>d5tjla_ c.68.1.9 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
vslprmvypqpkvltpcrkdvlvvtpwlapivwegtfnidilneqfrlqnttigltvfai
kkyvaflklfletaekhfmvghrvhyyvftdqpaavprvtlgtgrqlsvlevrrflsevd
ylvcvdvdmefrdhvgveiltplfgtlhpgfygssreaftyerrpqsqayipkdegdfyy
lggffggsvqevqrltrachqammvdqangieavwhdeshlnkyllrhkptkvlspeylw
dqqllgwpavlrklrftavp

SCOPe Domain Coordinates for d5tjla_:

Click to download the PDB-style file with coordinates for d5tjla_.
(The format of our PDB-style files is described here.)

Timeline for d5tjla_:

  • d5tjla_ appears in periodic updates to SCOPe 2.06 starting on 2017-06-15