SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5t0bc_ (5t0b C:)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2040266Fold b.19: Viral protein domain [49817] (1 superfamily)
    sandwich; 9 strands in 2 sheets; jelly-roll; form trimers
  4. 2040267Superfamily b.19.1: Viral protein domain [49818] (4 families) (S)
    forms homotrimers
  5. 2040896Family b.19.1.0: automated matches [227246] (1 protein)
    not a true family
  6. 2040897Protein automated matches [227017] (29 species)
    not a true protein
  7. 2041012Species Influenza a virus [TaxId:119212] [270847] (8 PDB entries)
  8. 2292140Domain d5t0bc_: 5t0b C: [335441]
    Other proteins in same PDB: d5t0bd_
    automated match to d4xkga_
    complexed with gal, nag, sia; mutant

Details for d5t0bc_

PDB Entry: 5t0b (more details), 2 Å

PDB Description: crystal structure of h6 hemagglutinin g225d mutant from taiwan (2013) h6n1 influenza virus in complex with 6'-sln
PDB Compounds: (C:) Hemagglutinin

SCOPe Domain Sequences for d5t0bc_:

Sequence, based on SEQRES records: (download)

>d5t0bc_ b.19.1.0 (C:) automated matches {Influenza a virus [TaxId: 119212]}
gdkicigyhannsttqvdtlleknvtvthsvellenqkekrfckimnkapldlkdctieg
wilgnpkcdlllgdqswsyiverpnaqngicypgvlneleelkafigsgerverfemfpk
stwagvdtsrgvtnacpsytidssfyrnlvwivktdsatypvikgtynntgtqpilyfwg
vhhpldttvqdnlygsgdkyvrmgtesmnfakspeiaarpavndqrsridyywsvlrpge
tlnvesngnliapwyaykfvstnkkgavfksdlpiencdatcqtitgvlrtnktfqnvsp
lwigecpkyvkseslrlatglrnvpqiat

Sequence, based on observed residues (ATOM records): (download)

>d5t0bc_ b.19.1.0 (C:) automated matches {Influenza a virus [TaxId: 119212]}
gdkicigyhannsttqvdtlleknvtvthsvellenqkekrfckimnkapldlkdctieg
wilgnpkcdlllgdqswsyiverpnaqngicypgvlneleelkafigsgerverfemfpk
stwagvdtsrgvtnacpsytidssfyrnlvwivktdsatypvikgtynntgtqpilyfwg
vhhpldttvqdnlygsgdkyvrmgtesmnfakspeiaarpavndqrsridyywsvlrpge
tlnvesngnliapwyaykfvskgavfksdlpiencdatcqtitgvlrtnktfqnvsplwi
gecpkyvkseslrlatglrnvpqiat

SCOPe Domain Coordinates for d5t0bc_:

Click to download the PDB-style file with coordinates for d5t0bc_.
(The format of our PDB-style files is described here.)

Timeline for d5t0bc_:

  • d5t0bc_ appears in periodic updates to SCOPe 2.06 starting on 2017-06-15