Lineage for d5n28f_ (5n28 F:)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2172288Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 2177144Superfamily d.58.31: Methyl-coenzyme M reductase subunits [55088] (3 families) (S)
    each of the three different subunits, alpha, beta and gamma, contains this fold decorated with additional secondary structures
  5. 2177239Family d.58.31.0: automated matches [227271] (1 protein)
    not a true family
  6. 2177240Protein automated matches [227074] (4 species)
    not a true protein
  7. 2292072Species Methanotorris formicicus [TaxId:647171] [335373] (2 PDB entries)
  8. 2292073Domain d5n28f_: 5n28 F: [335374]
    Other proteins in same PDB: d5n28b2, d5n28e2
    automated match to d1e6yc_
    complexed with com, f43, k, tp7

Details for d5n28f_

PDB Entry: 5n28 (more details)

PDB Description: methyl-coenzyme m reductase iii from methanotorris formicicus monoclinic form
PDB Compounds: (F:) Methyl-coenzyme M reductase, gamma subunit

SCOPe Domain Sequences for d5n28f_:

Sequence, based on SEQRES records: (download)

>d5n28f_ d.58.31.0 (F:) automated matches {Methanotorris formicicus [TaxId: 647171]}
ykpqfypgetkiaqnrrnhmnpeveleklreipdedvvkimghrqpgedyktihppleem
dlpddyvrdlvepingakeghriryiqfadsmyfapaqpydrartymwrfrgvdtgtlsg
rqviemresdlealsknflidtaffdparcgirgatvhghslrldenglmfdalqryvyd
ektghvvyvkdqvgrpldepvdvgellpeeklreittiyrkdgvpmredkelltivkrih
rartlggfcptedtfkql

Sequence, based on observed residues (ATOM records): (download)

>d5n28f_ d.58.31.0 (F:) automated matches {Methanotorris formicicus [TaxId: 647171]}
ykpqfypgetkiaqnrrnhmnpeveleklreipdedvvkimghrqpgedyktihppleem
dlpddyvrdlvepingakeghriryiqfadsmyfapaqpydrartymwrfrgvdtgtlsg
rqviemresdlealsknflidtaffdparcgirgatvhghslrldenglmfdalqryvhv
vyvkdqvgrpldepvdvgellpeeklreittiyrkdgvpmredkelltivkrihrartlg
gfcptedtfkql

SCOPe Domain Coordinates for d5n28f_:

Click to download the PDB-style file with coordinates for d5n28f_.
(The format of our PDB-style files is described here.)

Timeline for d5n28f_:

  • d5n28f_ appears in periodic updates to SCOPe 2.06 starting on 2017-06-15