SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Methanotorris formicicus [TaxId: 647171]

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2172288Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 2177144Superfamily d.58.31: Methyl-coenzyme M reductase subunits [55088] (3 families) (S)
    each of the three different subunits, alpha, beta and gamma, contains this fold decorated with additional secondary structures
  5. 2177239Family d.58.31.0: automated matches [227271] (1 protein)
    not a true family
  6. 2177240Protein automated matches [227074] (4 species)
    not a true protein
  7. 2292072Species Methanotorris formicicus [TaxId:647171] [335373] (2 PDB entries)

PDB entries in Species: Methanotorris formicicus [TaxId: 647171]:

  1. Domain(s) for 5n28:
    1. 2292073Domain d5n28f_: 5n28 F: [335374]
      Other proteins in same PDB: d5n28b2, d5n28e2
      automated match to d1e6yc_
      complexed with com, f43, k, tp7
    2. 2292083Domain d5n28c_: 5n28 C: [335384]
      Other proteins in same PDB: d5n28b2, d5n28e2
      automated match to d1e6yc_
      complexed with com, f43, k, tp7
    3. 2292114Domain d5n28e1: 5n28 E:2-188 [335415]
      Other proteins in same PDB: d5n28b2, d5n28e2
      automated match to d1hbnb2
      complexed with com, f43, k, tp7
    4. 2292133Domain d5n28b1: 5n28 B:2-188 [335434]
      Other proteins in same PDB: d5n28b2, d5n28e2
      automated match to d1hbnb2
      complexed with com, f43, k, tp7
  2. Domain(s) for 5n2a:

More info for Species Methanotorris formicicus [TaxId:647171] from d.58.31.0 automated matches

Timeline for Species Methanotorris formicicus [TaxId:647171] from d.58.31.0 automated matches:

  • Species Methanotorris formicicus [TaxId:647171] from d.58.31.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-06-15