SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5x8gd_ (5x8g D:)

  1. Root: SCOPe 2.06
  2. 2217451Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)
  3. 2222543Fold e.23: Acetyl-CoA synthetase-like [56800] (1 superfamily)
    4 domains: (1&2) duplication: share the same alpha/beta fold; (3) beta-barrel; (4) alpha+beta
  4. 2222544Superfamily e.23.1: Acetyl-CoA synthetase-like [56801] (2 families) (S)
  5. 2222620Family e.23.1.0: automated matches [191594] (1 protein)
    not a true family
  6. 2222621Protein automated matches [191083] (22 species)
    not a true protein
  7. 2222641Species Bacillus subtilis [TaxId:224308] [276264] (5 PDB entries)
  8. 2292004Domain d5x8gd_: 5x8g D: [335305]
    automated match to d5buqb_
    complexed with ca, mg, na, peg, s0n; mutant

Details for d5x8gd_

PDB Entry: 5x8g (more details), 1.9 Å

PDB Description: binary complex structure of a double mutant i454ra456k of o- succinylbenzoate coa synthetase (mene) from bacillus subtilis bound with its product analogue osb-ncoa at 1.90 angstrom
PDB Compounds: (D:) 2-succinylbenzoate--CoA ligase

SCOPe Domain Sequences for d5x8gd_:

Sequence, based on SEQRES records: (download)

>d5x8gd_ e.23.1.0 (D:) automated matches {Bacillus subtilis [TaxId: 224308]}
lteqpnwlmqraqltperialiyedqtvtfaelfaaskrmaeqlaahsvrkgdtaaillq
nraemvyavhacfllgvkavllntklstherlfqledsgsgflltdssfekkeyehivqt
idvdelmkeaaeeieieaymqmdatatlmytsgttgkpkgvqqtfgnhyfsavssalnlg
iteqdrwlialplfhisglsalfksviygmtvvlhqrfsvsdvlhsinrhevtmisavqt
mlaslleetnrcpesircillgggpaplplleecrekgfpvfqsygmtetcsqivtlspe
fsmeklgsagkplfsceikierdgqvcepyehgeimvkgpnvmksyfnresaneasfqng
wlktgdlgyldnegflyvldrrsdliisggeniypaevesvllshpavaeagvsgaedkk
wgkvphaylvlhkpvsageltdyckerlakykrpkkffvldrlprnasnkllrnqlkdar
kgel

Sequence, based on observed residues (ATOM records): (download)

>d5x8gd_ e.23.1.0 (D:) automated matches {Bacillus subtilis [TaxId: 224308]}
lteqpnwlmqraqltperialiyedqtvtfaelfaaskrmaeqlaahsvrkgdtaaillq
nraemvyavhacfllgvkavllntklstherlfqledsgsgflltdssfekkeyehivqt
idvdelmkeaaeeieieaymqmdatatlmytsgttgkpkgvqqtfgnhyfsavssalnlg
iteqdrwlialplfhisglsalfksviygmtvvlhqrfsvsdvlhsinrhevtmisavqt
mlaslleetnrcpesircillgggpaplplleecrekgfpvfqsygmtetcsqivtlspe
fsmeklgsagkplfsceikierdgqvcepyehgeimvkgpnvmksyfnresaneasfqng
wlktgdlgyldnegflyvldrrsdliisggeniypaevesvllshpavaeagvsgaedkk
wgkvphaylvlhkpvsageltdyckerlakykrpkkffvldrlprnasnkllrnqlkdrk
gel

SCOPe Domain Coordinates for d5x8gd_:

Click to download the PDB-style file with coordinates for d5x8gd_.
(The format of our PDB-style files is described here.)

Timeline for d5x8gd_:

  • d5x8gd_ appears in periodic updates to SCOPe 2.06 starting on 2017-06-08