SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5k5ca_ (5k5c A:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2142044Fold c.87: UDP-Glycosyltransferase/glycogen phosphorylase [53755] (1 superfamily)
    consists of two non-similar domains with 3 layers (a/b/a) each
    domain 1: parallel beta-sheet of 7 strands, order 3214567
    domain 2: parallel beta-sheet of 6 strands, order 321456
  4. 2142045Superfamily c.87.1: UDP-Glycosyltransferase/glycogen phosphorylase [53756] (14 families) (S)
  5. 2142537Family c.87.1.0: automated matches [191559] (1 protein)
    not a true family
  6. 2142538Protein automated matches [190965] (26 species)
    not a true protein
  7. 2290797Species Mycobacterium thermoresistibile [TaxId:1797] [334098] (7 PDB entries)
  8. 2291946Domain d5k5ca_: 5k5c A: [335247]
    automated match to d5hxaa_
    complexed with edo, nhe, tre

Details for d5k5ca_

PDB Entry: 5k5c (more details), 1.85 Å

PDB Description: structure of mycobacterium thermoresistibile trehalose-6-phosphate synthase in a complex with trehalose.
PDB Compounds: (A:) alpha,alpha-trehalose-phosphate synthase

SCOPe Domain Sequences for d5k5ca_:

Sequence, based on SEQRES records: (download)

>d5k5ca_ c.87.1.0 (A:) automated matches {Mycobacterium thermoresistibile [TaxId: 1797]}
gdsdfvvvanrlpidlerapdgttswkrspgglvtalepllrrrrgawigwpgipdsded
pivdgdlvlypvrlsaddvaqyyegfsnatlwplyhdvivkpiynrqwweryvevnrrfa
eatsraaargatvwvqdyqlqlvpkmlrelrpdltigfflhipfppvelfmqlpwrteit
dgllgadlvgfhlpggaqnflflarrlvgantsrasvgvrskfgevqigsrtvkvgafpi
sidsadldrqarqrsirqrarqiraelgnprrillgvdrldytkgidvrlqafaellaeg
rvnredtvfvqlatpsrerveayrllrddierqvghingeygevghpvvhylhrpvpree
liaffvaadvmlvtplrdgmnlvakeyvacrsdlggalvlseftgaaaelgqaylvnphn
ldhvkdtmvaalnqtpeegrrrmralrrqvlahdvdlwarsfldalastr

Sequence, based on observed residues (ATOM records): (download)

>d5k5ca_ c.87.1.0 (A:) automated matches {Mycobacterium thermoresistibile [TaxId: 1797]}
gdsdfvvvanrlpidlwkrspgglvtalepllrrrrgawigwpgipdsdedpivdgdlvl
ypvrlsaddvaqyyegfsnatlwplyhdvivkpiynrqwweryvevnrrfaeatsraaar
gatvwvqdyqlqlvpkmlrelrpdltigfflhipfppvelfmqlpwrteitdgllgadlv
gfhlpggaqnflflarrlvgantsrasvgvrskfgevqigsrtvkvgafpisidsadldr
qarqrsirqrarqiraelgnprrillgvdrldytkgidvrlqafaellaegrvnredtvf
vqlatpsrerveayrllrddierqvghingeygevghpvvhylhrpvpreeliaffvaad
vmlvtplrdgmnlvakeyvacrsdlggalvlseftgaaaelgqaylvnphnldhvkdtmv
aalnqtpeegrrrmralrrqvlahdvdlwarsfldalastr

SCOPe Domain Coordinates for d5k5ca_:

Click to download the PDB-style file with coordinates for d5k5ca_.
(The format of our PDB-style files is described here.)

Timeline for d5k5ca_:

  • d5k5ca_ appears in periodic updates to SCOPe 2.06 starting on 2017-06-08