SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5nd6b3 (5nd6 B:580-718)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2120181Fold c.48: TK C-terminal domain-like [52921] (1 superfamily)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 13245, strand 1 is antiparallel to the rest
  4. 2120182Superfamily c.48.1: TK C-terminal domain-like [52922] (4 families) (S)
  5. 2120348Family c.48.1.0: automated matches [227237] (1 protein)
    not a true family
  6. 2120349Protein automated matches [226991] (9 species)
    not a true protein
  7. 2291787Species Chlamydomonas reinhardtii [TaxId:3055] [335088] (2 PDB entries)
  8. 2291912Domain d5nd6b3: 5nd6 B:580-718 [335213]
    Other proteins in same PDB: d5nd6a1, d5nd6a2, d5nd6b1, d5nd6b2
    automated match to d1itza3
    complexed with edo

Details for d5nd6b3

PDB Entry: 5nd6 (more details), 1.58 Å

PDB Description: crystal structure of apo transketolase from chlamydomonas reinhardtii
PDB Compounds: (B:) transketolase

SCOPe Domain Sequences for d5nd6b3:

Sequence; same for both SEQRES and ATOM records: (download)

>d5nd6b3 c.48.1.0 (B:580-718) automated matches {Chlamydomonas reinhardtii [TaxId: 3055]}
pncsvegvakgaytihdtkagvkpdvilmgtgselelataaagilekegknvrvvsfpcw
elfeeqsaeykesvlpsdvtarvsveaatsfgwakyiglkgkhvgidtfgasapaptlye
kfgitvnhvveaakatlqh

SCOPe Domain Coordinates for d5nd6b3:

Click to download the PDB-style file with coordinates for d5nd6b3.
(The format of our PDB-style files is described here.)

Timeline for d5nd6b3:

  • d5nd6b3 appears in periodic updates to SCOPe 2.06 starting on 2017-06-08