SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5v4ld_ (5v4l D:)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2010255Fold a.127: L-aspartase-like [48556] (1 superfamily)
    multihelical, consists of three all-alpha domains
  4. 2010256Superfamily a.127.1: L-aspartase-like [48557] (3 families) (S)
  5. 2010426Family a.127.1.0: automated matches [191431] (1 protein)
    not a true family
  6. 2010427Protein automated matches [190621] (19 species)
    not a true protein
  7. 2291887Species Cryptococcus neoformans [TaxId:5207] [335188] (1 PDB entry)
  8. 2291888Domain d5v4ld_: 5v4l D: [335189]
    automated match to d2vd6b_

Details for d5v4ld_

PDB Entry: 5v4l (more details), 2.1 Å

PDB Description: cryptococcus neoformans adenylosuccinate lyase
PDB Compounds: (D:) adenylosuccinate lyase

SCOPe Domain Sequences for d5v4ld_:

Sequence, based on SEQRES records: (download)

>d5v4ld_ a.127.1.0 (D:) automated matches {Cryptococcus neoformans [TaxId: 5207]}
mdsyqtplssryaskemsklfssgarfgtwrklwlnlaiaekelglaisdaaieqmkanl
eldeaqmkvaaeeekkrrhdvmahvhtfgtvapeaagiihlgatscyvtdnadliflrdg
ldillpklatvisrlanfakqyrdlptlgfthfqpaqlttvgkratlwiqellwdlrnlq
rarddlgfrgvkgttgtqasflalfdgdhakvealdkrvtelfgfpyaypvtgqtysrki
dadvlgplssfgatvhkiatdirllanlkeieepfekdqigssamaykrnpmrceracsl
arhlmaiyqntlmtssvqwlertlddsanrrvtipeafltadillttlqniseglvvypr
vigrrisqelpfmateniimaivkaggdrqechekirvlshqagavvkeeggendlidrv
kndeyfkpiwgqldalldprtfvgrapeqvdgflkewvepalkpyeea

Sequence, based on observed residues (ATOM records): (download)

>d5v4ld_ a.127.1.0 (D:) automated matches {Cryptococcus neoformans [TaxId: 5207]}
mdsyqtplssskemsklfssgarfgtwrklwlnlaiaekelglaisdaaieqmkanleld
eaqmkvaaeeehdvmahvhtfgtvapeaagiihlgatscyvtdnadliflrdgldillpk
latvisrlanfakqyrdlptlgfthfqpaqlttvgkratlwiqellwdlrnlqrarddlg
frgvkgttgtqasflalfdgdhakvealdkrvtelfgfpyaypvtgqtysrkidadvlgp
lssfgatvhkiatdirllanlkeieepfaykrnpmrceracslarhlmaiyqntlmtssv
qwlertlddsanrrvtipeafltadillttlqniseglvvyprvigrrisqelpfmaten
iimaivkaggdrqechekirvlshqagavvkeeggendlidrvkndeyfkpiwgqldall
dprtfvgrapeqvdgflkewvepalkpyeea

SCOPe Domain Coordinates for d5v4ld_:

Click to download the PDB-style file with coordinates for d5v4ld_.
(The format of our PDB-style files is described here.)

Timeline for d5v4ld_:

  • d5v4ld_ appears in periodic updates to SCOPe 2.06 starting on 2017-06-08