SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5nmlb1 (5nml B:2-118)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2017117Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 2019634Protein automated matches [190119] (21 species)
    not a true protein
  7. 2020007Species Llama (Lama glama) [TaxId:9844] [187485] (128 PDB entries)
  8. 2291863Domain d5nmlb1: 5nml B:2-118 [335164]
    Other proteins in same PDB: d5nmla2, d5nmlb2, d5nmlc2, d5nmld2, d5nmle2, d5nmlf2, d5nmlg2, d5nmlh2
    automated match to d3ogog_
    complexed with edo, hg

Details for d5nmlb1

PDB Entry: 5nml (more details), 2.5 Å

PDB Description: nb36 ser85cys with hg bound
PDB Compounds: (B:) Nanobody Nb36 Ser85Cys

SCOPe Domain Sequences for d5nmlb1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5nmlb1 b.1.1.1 (B:2-118) automated matches {Llama (Lama glama) [TaxId: 9844]}
qvqlvesggglvqaggslrlscvvsgsavsdyamgwyrqapgkqrelvaaiynsgrtnyv
dsvkgrftiskdnakktvylqmnclkpedtadyfcnllgattmsnavwgqgtqvtvs

SCOPe Domain Coordinates for d5nmlb1:

Click to download the PDB-style file with coordinates for d5nmlb1.
(The format of our PDB-style files is described here.)

Timeline for d5nmlb1:

  • d5nmlb1 appears in periodic updates to SCOPe 2.06 starting on 2017-06-08