SCOPe 2.06: Domain d5u36b1: 5u36 B:2-306

Lineage for d5u36b1 (5u36 B:2-306)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.26: Adenine nucleotide alpha hydrolase-like [52373] (3 superfamilies)
   core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145

4. Superfamily c.26.1: Nucleotidylyl transferase [52374] (6 families)

5. Family c.26.1.1: Class I aminoacyl-tRNA synthetases (RS), catalytic domain [52375] (13 proteins)
   contains a conserved all-alpha subdomain at the C-terminal extension

6. Protein automated matches [190581] (9 species)
   not a true protein

7. Species Methanocaldococcus jannaschii [TaxId:243232] [193079] (10 PDB entries)

8. Domain d5u36b1: 5u36 B:2-306 [335151]
   Other proteins in same PDB: d5u36a2, d5u36b2
   automated match to d1u7xa_
   mutant

Details for d5u36b1

PDB Entry: 5u36, 3.03 Å

PDB Description: crystal structure of a mutant m. jannashii tyrosyl-trna synthetase

PDB Compounds: (B:) Tyrosine--tRNA ligase

SCOPe Domain Sequences for d5u36b1:

Sequence, based on SEQRES records:

>d5u36b1 c.26.1.1 (B:2-306) automated matches {Methanocaldococcus jannaschii [TaxId: 243232]}
defemikrntseiiseeelrevlkkdeksasigfepsgkihlghylqikkmidlqnagfd
iiialadlhaylnqkgeldeirkigdynkkvfeamglkakyvygsekhldkdytlnvyrl
alkttlkrarrsmeliaredenpkvaeviypimqvngihykgvdvavggmeqrkihmlar
ellpkkvvcihnpvltgldgegkmssskgnfiavddspeeirakikkaycpagvvegnpi
meiakyfleypltikrpekfggdltvnsyeeleslfknkelhpmdlknavaeelikilep
irkrl

Sequence, based on observed residues (ATOM records):

>d5u36b1 c.26.1.1 (B:2-306) automated matches {Methanocaldococcus jannaschii [TaxId: 243232]}
defemikrntseiiseeelrevlkkdeksasigfepsgkihlghylqikkmidlqnagfd
iiialadlhayeldeirkigdynkkvfeamglkakyvygsldkdytlnvyrlalkttlkr
arrsmeliarpkvaeviypimqvngihykgvdvavggmeqrkihmlarellpkkvvcihn
pvltgldgegkmssskgnfiavddspeeirakikkaycpagvvegnpimeiakyfleypl
tikrpekfggdltvnsyeeleslfknkelhpmdlknavaeelikilepirkrl

Timeline for d5u36b1:

• d5u36b1 is new in SCOPe 2.06-stable
  
• d5u36b1 appears in SCOPe 2.07
  
• d5u36b1 appears in the current release, SCOPe 2.08