SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5l3ka_ (5l3k A:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2142044Fold c.87: UDP-Glycosyltransferase/glycogen phosphorylase [53755] (1 superfamily)
    consists of two non-similar domains with 3 layers (a/b/a) each
    domain 1: parallel beta-sheet of 7 strands, order 3214567
    domain 2: parallel beta-sheet of 6 strands, order 321456
  4. 2142045Superfamily c.87.1: UDP-Glycosyltransferase/glycogen phosphorylase [53756] (14 families) (S)
  5. 2142537Family c.87.1.0: automated matches [191559] (1 protein)
    not a true family
  6. 2142538Protein automated matches [190965] (26 species)
    not a true protein
  7. 2290797Species Mycobacterium thermoresistibile [TaxId:1797] [334098] (4 PDB entries)
  8. 2291822Domain d5l3ka_: 5l3k A: [335123]
    automated match to d5hxaa_
    complexed with adp, edo, f6p, po4

Details for d5l3ka_

PDB Entry: 5l3k (more details), 2.31 Å

PDB Description: structure of mycobacterium thermoresistibile trehalose-6-phosphate synthase in a ternary complex with adp and fructose-6-phosphate
PDB Compounds: (A:) alpha,alpha-trehalose-phosphate synthase

SCOPe Domain Sequences for d5l3ka_:

Sequence, based on SEQRES records: (download)

>d5l3ka_ c.87.1.0 (A:) automated matches {Mycobacterium thermoresistibile [TaxId: 1797]}
sdfvvvanrlpidlerapdgttswkrspgglvtalepllrrrrgawigwpgipdsdedpi
vdgdlvlypvrlsaddvaqyyegfsnatlwplyhdvivkpiynrqwweryvevnrrfaea
tsraaargatvwvqdyqlqlvpkmlrelrpdltigfflhipfppvelfmqlpwrteitdg
llgadlvgfhlpggaqnflflarrlvgantsrasvgvrskfgevqigsrtvkvgafpisi
dsadldrqarqrsirqrarqiraelgnprrillgvdrldytkgidvrlqafaellaegrv
nredtvfvqlatpsrerveayrllrddierqvghingeygevghpvvhylhrpvpreeli
affvaadvmlvtplrdgmnlvakeyvacrsdlggalvlseftgaaaelgqaylvnphnld
hvkdtmvaalnqtpeegrrrmralrrqvlahdvdlwarsfldalastr

Sequence, based on observed residues (ATOM records): (download)

>d5l3ka_ c.87.1.0 (A:) automated matches {Mycobacterium thermoresistibile [TaxId: 1797]}
sdfvvvanrlpidlrspgglvtalepllrrawigwpgipdsdedpvlypvrlsaddvaqy
yegfsnatlwplyhdvivkpiynrqwweryvevnrrfaeatsraaargatvwvqdyqlql
vpkmlrelrpdltigfflhipfppvelfmqlpwrteitdgllgadlvgfhlpggaqnflf
larrlvgantsrasvgvrskfgevqigsrtvkvgafpisidsadldrqarqrsirqrarq
iraelgnprrillgvdrldytkgidvrlqafaellaegrvnredtvfvqlatpsrervea
yrllrddierqvghingeygevghpvvhylhrpvpreeliaffvaadvmlvtplrdgmnl
vakeyvacrsdlggalvlseftgaaaelgqaylvnphnldhvkdtmvaalnqtpeegrrr
mralrrqvlahdvdlwarsfldalastr

SCOPe Domain Coordinates for d5l3ka_:

Click to download the PDB-style file with coordinates for d5l3ka_.
(The format of our PDB-style files is described here.)

Timeline for d5l3ka_:

  • d5l3ka_ appears in periodic updates to SCOPe 2.06 starting on 2017-06-08