SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Chlamydomonas reinhardtii [TaxId: 3055]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2120181Fold c.48: TK C-terminal domain-like [52921] (1 superfamily)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 13245, strand 1 is antiparallel to the rest
  4. 2120182Superfamily c.48.1: TK C-terminal domain-like [52922] (4 families) (S)
  5. 2120348Family c.48.1.0: automated matches [227237] (1 protein)
    not a true family
  6. 2120349Protein automated matches [226991] (9 species)
    not a true protein
  7. 2291787Species Chlamydomonas reinhardtii [TaxId:3055] [335088] (2 PDB entries)

PDB entries in Species: Chlamydomonas reinhardtii [TaxId: 3055]:

  1. Domain(s) for 5nd5:
    1. 2291798Domain d5nd5b3: 5nd5 B:580-717 [335099]
      Other proteins in same PDB: d5nd5a1, d5nd5a2, d5nd5b1, d5nd5b2
      automated match to d1itza3
      complexed with mg, tpp
    2. 2291868Domain d5nd5a3: 5nd5 A:580-717 [335169]
      Other proteins in same PDB: d5nd5a1, d5nd5a2, d5nd5b1, d5nd5b2
      automated match to d1itza3
      complexed with mg, tpp
  2. Domain(s) for 5nd6:
    1. 2291788Domain d5nd6a3: 5nd6 A:580-717 [335089]
      Other proteins in same PDB: d5nd6a1, d5nd6a2, d5nd6b1, d5nd6b2
      automated match to d1itza3
      complexed with edo
    2. 2291912Domain d5nd6b3: 5nd6 B:580-718 [335213]
      Other proteins in same PDB: d5nd6a1, d5nd6a2, d5nd6b1, d5nd6b2
      automated match to d1itza3
      complexed with edo

More info for Species Chlamydomonas reinhardtii [TaxId:3055] from c.48.1.0 automated matches

Timeline for Species Chlamydomonas reinhardtii [TaxId:3055] from c.48.1.0 automated matches:

  • Species Chlamydomonas reinhardtii [TaxId:3055] from c.48.1.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-06-08