Lineage for Species: Chlamydomonas reinhardtii [TaxId: 3055]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2108258Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 2108259Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. 2108851Family c.36.1.0: automated matches [227300] (1 protein)
    not a true family
  6. 2108852Protein automated matches [227126] (20 species)
    not a true protein
  7. 2291784Species Chlamydomonas reinhardtii [TaxId:3055] [335084] (2 PDB entries)

PDB entries in Species: Chlamydomonas reinhardtii [TaxId: 3055]:

  1. Domain(s) for 5nd5:
    1. 2291796Domain d5nd5b1: 5nd5 B:49-387 [335097]
      Other proteins in same PDB: d5nd5a3, d5nd5b3
      automated match to d1itza1
      complexed with mg, tpp
    2. 2291797Domain d5nd5b2: 5nd5 B:388-579 [335098]
      Other proteins in same PDB: d5nd5a3, d5nd5b3
      automated match to d1itza2
      complexed with mg, tpp
    3. 2291866Domain d5nd5a1: 5nd5 A:49-387 [335167]
      Other proteins in same PDB: d5nd5a3, d5nd5b3
      automated match to d1itza1
      complexed with mg, tpp
    4. 2291867Domain d5nd5a2: 5nd5 A:388-579 [335168]
      Other proteins in same PDB: d5nd5a3, d5nd5b3
      automated match to d1itza2
      complexed with mg, tpp
  2. Domain(s) for 5nd6:
    1. 2291785Domain d5nd6a1: 5nd6 A:49-387 [335086]
      Other proteins in same PDB: d5nd6a3, d5nd6b3
      automated match to d1itza1
      complexed with edo
    2. 2291786Domain d5nd6a2: 5nd6 A:388-579 [335087]
      Other proteins in same PDB: d5nd6a3, d5nd6b3
      automated match to d1itza2
      complexed with edo
    3. 2291910Domain d5nd6b1: 5nd6 B:49-387 [335211]
      Other proteins in same PDB: d5nd6a3, d5nd6b3
      automated match to d1itza1
      complexed with edo
    4. 2291911Domain d5nd6b2: 5nd6 B:388-579 [335212]
      Other proteins in same PDB: d5nd6a3, d5nd6b3
      automated match to d1itza2
      complexed with edo

More info for Species Chlamydomonas reinhardtii [TaxId:3055] from c.36.1.0 automated matches

Timeline for Species Chlamydomonas reinhardtii [TaxId:3055] from c.36.1.0 automated matches:

  • Species Chlamydomonas reinhardtii [TaxId:3055] from c.36.1.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-06-08