SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5k0ra_ (5k0r A:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2080000Superfamily c.1.4: FMN-linked oxidoreductases [51395] (2 families) (S)
  5. 2080511Family c.1.4.0: automated matches [191310] (1 protein)
    not a true family
  6. 2080512Protein automated matches [190048] (19 species)
    not a true protein
  7. 2080599Species Shewanella oneidensis [TaxId:211586] [187764] (9 PDB entries)
  8. 2291779Domain d5k0ra_: 5k0r A: [335080]
    automated match to d3kruc_
    complexed with 8k6, fnr

Details for d5k0ra_

PDB Entry: 5k0r (more details), 1.45 Å

PDB Description: crystal structure of reduced shewanella yellow enzyme 4 (sye4)
PDB Compounds: (A:) NAD(P)H:flavin oxidoreductase Sye4

SCOPe Domain Sequences for d5k0ra_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5k0ra_ c.1.4.0 (A:) automated matches {Shewanella oneidensis [TaxId: 211586]}
svenlfdtyklndtitlknrilmapltrcmadanlvptddmvayyarraeagliiseati
irpdaqgypntpgiftqaqiagwrkvtdavhanggkifvqlwhtgrvahphffgggdvla
psaqkiegsvprmreltyvtpkavtvediqglvrdyakaaenvieagfdgveihgangyl
idqflhhdsnrrtdeyggtpvnmsrfalevvdaiiarighdrtglrispgayfnmasdsr
drvvfdyllpelekrdlafvhigifddsiefdylggtassyvrahygktlvgvgsysaet
askaiaedkfdliaigrpfianpdyvakvrnseelvaysdemlasli

SCOPe Domain Coordinates for d5k0ra_:

Click to download the PDB-style file with coordinates for d5k0ra_.
(The format of our PDB-style files is described here.)

Timeline for d5k0ra_:

  • d5k0ra_ appears in periodic updates to SCOPe 2.06 starting on 2017-06-08