SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5jsia_ (5jsi A:)

  1. Root: SCOPe 2.06
  2. 2223823Class f: Membrane and cell surface proteins and peptides [56835] (59 folds)
  3. 2225114Fold f.13: Class A G protein-coupled receptor (GPCR)-like [81322] (1 superfamily)
    core: up-and-down bundle of seven transmembrane helices tilted 20 degrees with respect to the plane of the membrane
  4. 2225115Superfamily f.13.1: Class A G protein-coupled receptor (GPCR)-like [81321] (5 families) (S)
    Pfam PF13853. Phylogeny described in PubMed 12761335
  5. 2225357Family f.13.1.0: automated matches [227143] (1 protein)
    not a true family
  6. 2225358Protein automated matches [226845] (15 species)
    not a true protein
  7. 2291544Species Candidatus actinomarina [TaxId:1389454] [334845] (1 PDB entry)
  8. 2291729Domain d5jsia_: 5jsi A: [335030]
    automated match to d3ddlb_
    complexed with iod, lfa, olc

Details for d5jsia_

PDB Entry: 5jsi (more details), 2 Å

PDB Description: structure of membrane protein
PDB Compounds: (A:) bacteriorhodopsin

SCOPe Domain Sequences for d5jsia_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5jsia_ f.13.1.0 (A:) automated matches {Candidatus actinomarina [TaxId: 1389454]}
eeltyrlfmvatvgmlagtvfllassrevkpehrrgvyisalvcgiawyhyqkmgaswes
gsydtglryvdwvltvplmfvevlavtrkgaayneavrnwgiaatvmigagyygetsaag
sneywtgfviamatyvwlmrnlqaegeglkgdqavafeniknlilvgwiiyplgyiapvv
gdfdairevlytiadiinkvglgvlvlqmarvqsg

SCOPe Domain Coordinates for d5jsia_:

Click to download the PDB-style file with coordinates for d5jsia_.
(The format of our PDB-style files is described here.)

Timeline for d5jsia_:

  • d5jsia_ appears in periodic updates to SCOPe 2.06 starting on 2017-06-01