SCOPe 2.08: Domain d5x2nb_: 5x2n B:

Lineage for d5x2nb_ (5x2n B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.93: Periplasmic binding protein-like I [53821] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   parallel beta-sheet of 6 strands, order 213456

4. Superfamily c.93.1: Periplasmic binding protein-like I [53822] (2 families)
   Similar in architecture to the superfamily II but partly differs in topology

5. Family c.93.1.0: automated matches [191439] (1 protein)
   not a true family

6. Protein automated matches [190646] (77 species)
   not a true protein

7. Species Oryzias latipes [TaxId:8090] [334713] (5 PDB entries)

8. Domain d5x2nb_: 5x2n B: [334780]
   Other proteins in same PDB: d5x2nh_, d5x2nj_, d5x2nk1, d5x2nk2, d5x2nl1, d5x2nl2
   automated match to d4xara_
   complexed with ala, cl, na, nag

Details for d5x2nb_

PDB Entry: 5x2n, 2.2 Å

PDB Description: crystal structure of the medaka fish taste receptor t1r2a-t1r3 ligand binding domains in complex with l-alanine

PDB Compounds: (B:) Taste receptor, type 1, member 3

SCOPe Domain Sequences for d5x2nb_:

Sequence, based on SEQRES records:

>d5x2nb_ c.93.1.0 (B:) automated matches {Oryzias latipes [TaxId: 8090]}
pnwfnnistdlfsmpgdiklgglfpikeqsnevsndltklnsvscdslnkdglgralvmk
yaveeinansqllpgvklgykiyntcrhsavivrpalsflteksngtlsvecnytdyetd
mvavigpqssemvtvigkllgfflmpqisfgatsdkfsdslvypsffrtvpsdirqvdam
vqlikkfnwnwvavvgseeeygqqgvqqfskkaedmgvcvayqglipiyddpkpaiqtii
nniqttevkvvvvfslvspavsffeevikknltgvwiassswaisdkvyslpnidsigtv
igfidetetlellspftevlfkkiheasptekpedpynpcpecwslspanvslvkeesvq
rtafsvyaavytvahalhkllecnsaackwssstrlypwkllevlkefsvnisntslkfd
qngnpnigysviqriwenqslssvgsyrsanlsinetlfkwytnnsekpes

Sequence, based on observed residues (ATOM records):

>d5x2nb_ c.93.1.0 (B:) automated matches {Oryzias latipes [TaxId: 8090]}
pnwfnnistdlfsmpgdiklgglfpikeqsnvscdslnkdglgralvmkyaveeinansq
llpgvklgykiyntcrhsavivrpalsflteksngtlsvecnytdyetdmvavigpqsse
mvtvigkllgfflmpqisfgatsdkfsdslvypsffrtvpsdirqvdamvqlikkfnwnw
vavvgseeeygqqgvqqfskkaedmgvcvayqglipiyddpkpaiqtiinniqttevkvv
vvfslvspavsffeevikknltgvwiassswaisdkvyslpnidsigtvigfidetetle
llspftevlfkkiheasptekpdpynpcpecwslspanvslvkeesvqrtafsvyaavyt
vahalhkllecnsaackwssstrlypwkllevlkefsvnisntslkfdqngnpnigysvi
qriwenqslssvgsyrsanlsinetlfkwytnnsekpes

Timeline for d5x2nb_:

• d5x2nb_ first appeared in SCOPe 2.06
  
• d5x2nb_ appears in SCOPe 2.07