SCOPe 2.08: Domain d5n1ba2: 5n1b A:113-293

Lineage for d5n1ba2 (5n1b A:113-293)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.2: Common fold of diphtheria toxin/transcription factors/cytochrome f [49379] (9 superfamilies)
   sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold

4. Superfamily b.2.9: Peptidylarginine deiminase Pad4, middle domain [110083] (2 families)
   automatically mapped to Pfam PF08527

5. Family b.2.9.1: Peptidylarginine deiminase Pad4, middle domain [110084] (1 protein)

6. Protein Peptidylarginine deiminase Pad4, middle domain [110085] (1 species)

7. Species Human (Homo sapiens) [TaxId:9606] [110086] (17 PDB entries)
   Uniprot Q9UM07

8. Domain d5n1ba2: 5n1b A:113-293 [334761]
   Other proteins in same PDB: d5n1ba1, d5n1ba3
   automated match to d1wd8a1
   complexed with 8fw, ca, so4

Details for d5n1ba2

PDB Entry: 5n1b, 2.9 Å

PDB Description: hpad4 crystal complex with afm-14a

PDB Compounds: (A:) Protein-arginine deiminase type-4

SCOPe Domain Sequences for d5n1ba2:

Sequence, based on SEQRES records:

>d5n1ba2 b.2.9.1 (A:113-293) Peptidylarginine deiminase Pad4, middle domain {Human (Homo sapiens) [TaxId: 9606]}
veislcaditrtgkvkptravkdqrtwtwgpcgqgaillvncdrdnlessamdceddevl
dsedlqdmslmtlstktpkdfftnhtlvlhvarsemdkvrvfqatrgklsskcsvvlgpk
wpshylmvpggkhnmdfyvealafpdtdfpglitltislldtsnlelpeavvfqdsvvfr
v

Sequence, based on observed residues (ATOM records):

>d5n1ba2 b.2.9.1 (A:113-293) Peptidylarginine deiminase Pad4, middle domain {Human (Homo sapiens) [TaxId: 9606]}
veislcaditrtgrtwtwgpcgqgaillvncdrdnlessamdceddevldsedlqdmslm
tlstktpkdfftnhtlvlhvarsemdkvrvfqacsvvlgpkwpshylmvpggkhnmdfyv
ealafpdtdfpglitltislldtsnlelpeavvfqdsvvfrv

Timeline for d5n1ba2:

• d5n1ba2 first appeared in SCOPe 2.06
  
• d5n1ba2 appears in SCOPe 2.07