SCOPe 2.06: Domain d5vm5b_: 5vm5 B:

Lineage for d5vm5b_ (5vm5 B:)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.79: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53685] (1 superfamily)
   consists of two similar domains related by pseudo dyad; duplication
   core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 3214

4. Superfamily c.79.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53686] (2 families)

5. Family c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53687] (9 proteins)

6. Protein automated matches [190054] (13 species)
   not a true protein

7. Species Pyrococcus furiosus [TaxId:186497] [279274] (6 PDB entries)

8. Domain d5vm5b_: 5vm5 B: [334685]
   automated match to d5dw0a_
   complexed with 0jo, na, pls

Details for d5vm5b_

PDB Entry: 5vm5, 1.67 Å

PDB Description: engineered tryptophan synthase b-subunit from pyrococcus furiosus, pftrpb2b9, with ser bound

PDB Compounds: (B:) Tryptophan synthase beta chain 1

SCOPe Domain Sequences for d5vm5b_:

Sequence, based on SEQRES records:

>d5vm5b_ c.79.1.1 (B:) automated matches {Pyrococcus furiosus [TaxId: 186497]}
mwfgefggqyvpetlvgplkelekaykrfkddeefnrqlnyylktwagrptplyyakrlt
ekiggakvylkredlvhggahktnnaigqallaklmgktrliaetgagqhgvatamagal
lgmkvdiymgaedverqkmnvfrmkllganvipvnsgsrtlkdainealrdwvatfeyth
yligsvvgphpyptivrdfqsvigreakaqileaegqlpdvivacvgggsnamgifypfv
ndkkvklvgveaggkglesgkhsaslnagqvgvshgmlsyflqdeegqikpshsiapgld
ypgvgpehaylkkiqraeyvavtdeealkafhelsrtegiipalesahavayamklakem
srdeiiivnlsgrgdkdldivlkas

Sequence, based on observed residues (ATOM records):

>d5vm5b_ c.79.1.1 (B:) automated matches {Pyrococcus furiosus [TaxId: 186497]}
mwfgefggqyvpetlvgplkelekaykrfkddeefnrqlnyylktwagrptplyyakrlt
ekiggakvylkredlvhggahktnnaigqallaklmgktrliaetgagqhgvatamagal
lgmkvdiymgaedverqkmnvfrmkllganvipvnsgsrtlkdainealrdwvatfeyth
yligsvvgphpyptivrdfqsvigreakaqileaegqlpdvivacvgggsnamgifypfv
ndkkvklvgveaggkglesgkhsaslnagqvgvshgmlsyflqgqikpshsiapgldypg
vgpehaylkkiqraeyvavtdeealkafhelsrtegiipalesahavayamklakemsrd
eiiivnlsgrgdkdldivlkas

Timeline for d5vm5b_:

• d5vm5b_ is new in SCOPe 2.06-stable
  
• d5vm5b_ appears in SCOPe 2.07
  
• d5vm5b_ appears in the current release, SCOPe 2.08