Lineage for d5n0ma1 (5n0m A:3-112)

  1. Root: SCOPe 2.07
  2. 2352458Class b: All beta proteins [48724] (178 folds)
  3. 2380192Fold b.6: Cupredoxin-like [49502] (2 superfamilies)
    sandwich; 7 strands in 2 sheets, greek-key
    variations: some members have additional 1-2 strands
  4. 2380193Superfamily b.6.1: Cupredoxins [49503] (8 families) (S)
    contains copper-binding site
  5. 2381935Family b.6.1.6: Peptidylarginine deiminase Pad4, N-terminal domain [110107] (1 protein)
    probably related to cupredoxins but lacking the metal-binding site
    automatically mapped to Pfam PF08526
  6. 2381936Protein Peptidylarginine deiminase Pad4, N-terminal domain [110108] (1 species)
  7. 2381937Species Human (Homo sapiens) [TaxId:9606] [110109] (16 PDB entries)
    Uniprot Q9UM07
  8. 2381946Domain d5n0ma1: 5n0m A:3-112 [334591]
    Other proteins in same PDB: d5n0ma2, d5n0ma3
    automated match to d1wd8a2
    complexed with 8ht, ca, so4

Details for d5n0ma1

PDB Entry: 5n0m (more details), 2.18 Å

PDB Description: hpad4 crystal complex with bb-f-amidine
PDB Compounds: (A:) Protein-arginine deiminase type-4

SCOPe Domain Sequences for d5n0ma1:

Sequence, based on SEQRES records: (download)

>d5n0ma1 b.6.1.6 (A:3-112) Peptidylarginine deiminase Pad4, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
qgtlirvtpeqpthavcvlgtltqldicssapedctsfsinaspgvvvdiahsppakkks
tgsstwpldpgvevtltmkaasgstgdqkvqisyygpktppvkallylta

Sequence, based on observed residues (ATOM records): (download)

>d5n0ma1 b.6.1.6 (A:3-112) Peptidylarginine deiminase Pad4, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
qgtlirvtpeqpthavcvlgtltqldicssapedctsfsinaspgvvvdiahstwpldpg
vevtltmkaasgstgdqkvqisyygpktppvkallylta

SCOPe Domain Coordinates for d5n0ma1:

Click to download the PDB-style file with coordinates for d5n0ma1.
(The format of our PDB-style files is described here.)

Timeline for d5n0ma1: