SCOPe 2.08: Domain d5twja1: 5twj A:2-155

Lineage for d5twja1 (5twj A:2-155)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.116: alpha/beta knot [75216] (1 superfamily)
   core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot

4. Superfamily c.116.1: alpha/beta knot [75217] (9 families)
   known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
   all known members have dimeric structures

5. Family c.116.1.3: YbeA-like [82371] (5 proteins)
   Pfam PF02590

6. Protein automated matches [195222] (2 species)
   not a true protein

7. Species Escherichia coli [TaxId:562] [333863] (2 PDB entries)

8. Domain d5twja1: 5twj A:2-155 [333900]
   Other proteins in same PDB: d5twja2, d5twjb2, d5twjc2, d5twjd2
   automated match to d1ns5b_
   protein/RNA complex; complexed with sam

Details for d5twja1

PDB Entry: 5twj, 2.3 Å

PDB Description: crystal structure of rlmh in complex with s-adenosylmethionine

PDB Compounds: (A:) Ribosomal RNA large subunit methyltransferase H

SCOPe Domain Sequences for d5twja1:

Sequence; same for both SEQRES and ATOM records:

>d5twja1 c.116.1.3 (A:2-155) automated matches {Escherichia coli [TaxId: 562]}
klqlvavgtkmpdwvqtgfteylrrfpkdmpfelieipagkrgknadikrildkegeqml
aaagknrivtldipgkpwdtpqlaaelerwkldgrdvslliggpeglspackaaaeqsws
lsaltlphplvrvlvaeslyrawsittnhpyhre

Timeline for d5twja1:

• d5twja1 first appeared in SCOPe 2.06
  
• d5twja1 appears in SCOPe 2.07