SCOPe 2.08: Domain d5vgma1: 5vgm A:1-342

Lineage for d5vgma1 (5vgm A:1-342)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.9: Metallo-dependent hydrolases [51556] (19 families)
   the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
   has transition metal ions bound inside the barrel

5. Family c.1.9.0: automated matches [191327] (1 protein)
   not a true family

6. Protein automated matches [190150] (36 species)
   not a true protein

7. Species Vibrio cholerae [TaxId:666] [333555] (1 PDB entry)

8. Domain d5vgma1: 5vgm A:1-342 [333585]
   Other proteins in same PDB: d5vgma2, d5vgmb2
   automated match to d4lfyb_
   complexed with act, cl, zn

Details for d5vgma1

PDB Entry: 5vgm, 1.95 Å

PDB Description: crystal structure of dihydroorotase pyrc from vibrio cholerae in complex with zinc at 1.95 a resolution.

PDB Compounds: (A:) dihydroorotase

SCOPe Domain Sequences for d5vgma1:

Sequence, based on SEQRES records:

>d5vgma1 c.1.9.0 (A:1-342) automated matches {Vibrio cholerae [TaxId: 666]}
mttltitrpddwhvhlrdgdvladtvrdisryngralimpntvppvtttemalayrerim
aaqpqahfeplmalyltdntspeeirkakasgkvvaaklypagattnsdsgvtsakniyp
vlqamqevgmlllvhgevtthevdifdrektfldtvlapivndfpqlkivlehittadav
tfvqqagdnvaatitahhllfnrnhmlvggirphfyclpilkrathqhalvaaatsgskk
fflgtdsaphakgrkeaacgcagsytahaalelyaevfekegklenleafasfngpdfyg
lprnqetvtltkqawpvaesmpfgsdivvpirageniewtvk

Sequence, based on observed residues (ATOM records):

>d5vgma1 c.1.9.0 (A:1-342) automated matches {Vibrio cholerae [TaxId: 666]}
mttltitrpddwhvhlrdgdvladtvrdisryngralimpntvppvtttemalayrerim
aaqhfeplmalyltdntspeeirkakasgkvvaaklypgvtsakniypvlqamqevgmll
lvhgevtthevdifdrektfldtvlapivndfpqlkivlehittadavtfvqqagdnvaa
titahhllfnrnhmlvggirphfyclpilkrathqhalvaaatsgskkfflgtdsaphak
grkeaacgcagsytahaalelyaevfekegklenleafasfngpdfyglprnqetvtltk
qawpvaesmpfgsdivvpirageniewtvk

Timeline for d5vgma1:

• d5vgma1 first appeared in SCOPe 2.06
  
• d5vgma1 appears in SCOPe 2.07