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Lineage for d5th1d_ (5th1 D:)

  1. Root: SCOPe 2.06
  2. 2237529Class h: Coiled coil proteins [57942] (7 folds)
  3. 2238933Fold h.3: Stalk segment of viral fusion proteins [58063] (3 superfamilies)
    core: trimeric coiled coil
  4. 2238934Superfamily h.3.1: Influenza hemagglutinin (stalk) [58064] (2 families) (S)
  5. 2238935Family h.3.1.1: Influenza hemagglutinin (stalk) [58065] (2 protein domains)
  6. 2239322Protein automated matches [254646] (33 species)
    not a true protein
  7. 2239410Species Influenza A virus [TaxId:11320] [255822] (24 PDB entries)
  8. 2289561Domain d5th1d_: 5th1 D: [332862]
    Other proteins in same PDB: d5th1a_, d5th1c_, d5th1e_
    automated match to d3m5jb_
    complexed with bma, gal, man, nag, sia; mutant

Details for d5th1d_

PDB Entry: 5th1 (more details), 2.19 Å

PDB Description: crystal structure of h10 hemagglutinin mutant (k158aa-q226l-g228s) from jiangxi-donghu (2013) h10n8 influenza virus in complex with 6'- slnln
PDB Compounds: (D:) Hemagglutinin HA2 chain

SCOPe Domain Sequences for d5th1d_:

Sequence, based on SEQRES records: (download)

>d5th1d_ h.3.1.1 (D:) automated matches {Influenza A virus [TaxId: 11320]}
lfgaiagflengwegmvdgwygfrhqnaqgtgqaadykstqaaidqitgklnrlvektnt
efesiesefseiehqignvinwtkdsitdiwtyqaellvamenqhtidmadsemlnlyer
vrkqlrqnaeedgkgcfeiyhacddscmesirnntydhsqyreeallnrln

Sequence, based on observed residues (ATOM records): (download)

>d5th1d_ h.3.1.1 (D:) automated matches {Influenza A virus [TaxId: 11320]}
lfgaiagflengwegmvdgwygfrhqnaqgtgqaadykstqaaidqitgklnrlvektef
esiesefseiehqignvinwtkdsitdiwtyqaellvamenqhtidmadsemlnlyervr
kqlrqnaeedgkgcfeiyhacddscmesirnntydhsqyreeallnrln

SCOPe Domain Coordinates for d5th1d_:

Click to download the PDB-style file with coordinates for d5th1d_.
(The format of our PDB-style files is described here.)

Timeline for d5th1d_:

  • d5th1d_ appears in periodic updates to SCOPe 2.06 starting on 2017-04-06