SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5vaza_ (5vaz A:)

  1. Root: SCOPe 2.06
  2. 2217451Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)
  3. 2221844Fold e.13: DNA primase core [56730] (1 superfamily)
    2 domains: (1) alpha+beta; (2) toprim alpha/beta
  4. 2221845Superfamily e.13.1: DNA primase core [56731] (3 families) (S)
  5. 2289501Family e.13.1.0: automated matches [332802] (1 protein)
    not a true family
  6. 2289502Protein automated matches [332803] (1 species)
    not a true protein
  7. 2289503Species Pseudomonas aeruginosa [TaxId:208964] [332804] (1 PDB entry)
  8. 2289504Domain d5vaza_: 5vaz A: [332805]
    automated match to d1eqnc_
    complexed with so4

Details for d5vaza_

PDB Entry: 5vaz (more details), 2.4 Å

PDB Description: crystal structure of a dna primase domain from pseudomonas aeruginosa
PDB Compounds: (A:) DNA primase

SCOPe Domain Sequences for d5vaza_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5vaza_ e.13.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 208964]}
dsplypllsaaaefykqalkshparkaavnylkgrgltgeiardfglgfappgwdnllkh
lggdnlqlkamldagllvensdtgkrydrfrdrvmfpirdsrgriiafggrvlgddkpky
lnspetpvfhkgqelyglyearqknrdldeimvvegymdvialaqqgirnavatlgtats
eehikrlfrlvpsilfcfdgdqagrkaawralesvlpnlqdgkrvrflflpegedpdslv
raegedafraritqqaqplaeyffqqlmleadpatlegkahlatlaapllekipgnnlrl
lmrqrlseitglsgenigql

SCOPe Domain Coordinates for d5vaza_:

Click to download the PDB-style file with coordinates for d5vaza_.
(The format of our PDB-style files is described here.)

Timeline for d5vaza_:

  • d5vaza_ appears in periodic updates to SCOPe 2.06 starting on 2017-04-06