SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Helicobacter pylori [TaxId: 210]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2125386Fold c.56: Phosphorylase/hydrolase-like [53162] (8 superfamilies)
    core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops
  4. 2125403Superfamily c.56.2: Purine and uridine phosphorylases [53167] (2 families) (S)
    complex architecture; contains mixed beta-sheet of 8 strands, order 23415867, strands 3, 6 & 7 are antiparallel to the rest; and barrel, closed; n=5, S=8
  5. 2126300Family c.56.2.0: automated matches [191488] (1 protein)
    not a true family
  6. 2126301Protein automated matches [190781] (41 species)
    not a true protein
  7. 2289353Species Helicobacter pylori [TaxId:210] [332654] (2 PDB entries)

PDB entries in Species: Helicobacter pylori [TaxId: 210]:

  1. Domain(s) for 5mx6:
    1. 2289359Domain d5mx6c_: 5mx6 C: [332660]
      automated match to d4m3na_
      complexed with act, hpa, peg, po4, so4
    2. 2289382Domain d5mx6f_: 5mx6 F: [332683]
      automated match to d4m3na_
      complexed with act, hpa, peg, po4, so4
    3. 2289391Domain d5mx6a_: 5mx6 A: [332692]
      automated match to d4m3na_
      complexed with act, hpa, peg, po4, so4
    4. 2289407Domain d5mx6d_: 5mx6 D: [332708]
      automated match to d4m3na_
      complexed with act, hpa, peg, po4, so4
    5. 2289412Domain d5mx6b_: 5mx6 B: [332713]
      automated match to d4m3na_
      complexed with act, hpa, peg, po4, so4
    6. 2289413Domain d5mx6e_: 5mx6 E: [332714]
      automated match to d4m3na_
      complexed with act, hpa, peg, po4, so4
  2. Domain(s) for 5mx8:

More info for Species Helicobacter pylori [TaxId:210] from c.56.2.0 automated matches

Timeline for Species Helicobacter pylori [TaxId:210] from c.56.2.0 automated matches:

  • Species Helicobacter pylori [TaxId:210] from c.56.2.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-04-05