SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5hxpa_ (5hxp A:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2148252Fold c.101: Undecaprenyl diphosphate synthase [64004] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 342156
  4. 2148253Superfamily c.101.1: Undecaprenyl diphosphate synthase [64005] (2 families) (S)
    the sheet topology is similar to those of the N-terminal domain of phosphoglycerate kinase and carbamate kinase
  5. 2148319Family c.101.1.0: automated matches [191361] (1 protein)
    not a true family
  6. 2148320Protein automated matches [190431] (7 species)
    not a true protein
  7. 2289224Species Solanum habrochaites [TaxId:62890] [332525] (5 PDB entries)
  8. 2289288Domain d5hxpa_: 5hxp A: [332589]
    automated match to d4h8ea_
    complexed with ipr, mg, o4b; mutant

Details for d5hxpa_

PDB Entry: 5hxp (more details), 1.95 Å

PDB Description: crystal structure of z,z-farnesyl diphosphate synthase (d71m, e75a and h103y mutants) complexed with ipp
PDB Compounds: (A:) (2Z,6Z)-farnesyl diphosphate synthase, chloroplastic

SCOPe Domain Sequences for d5hxpa_:

Sequence, based on SEQRES records: (download)

>d5hxpa_ c.101.1.0 (A:) automated matches {Solanum habrochaites [TaxId: 62890]}
ldealmpkhialimdgnrrwakdkgldvsegykhlfpklkeicdissklgiqvitafafs
tenwkrakgevdflmqmfeelydefsrsgvrvsiigcktdlpmtlqkcialteettkgnk
glhlvialnyggyydilqatksivnkamnglldvedinknlfdqeleskcpnpdllirtg
gdqrvsnfllwqlaytefyftktlfpdfgeedlkeaiinfqqrhrrfggh

Sequence, based on observed residues (ATOM records): (download)

>d5hxpa_ c.101.1.0 (A:) automated matches {Solanum habrochaites [TaxId: 62890]}
ldealmpkhialimdgnrrwakdkgldvsegykhlfpklkeicdissklgiqvitafafs
tenevdflmqmfeelydefsrsgvrvsiigcktdlpmtlqkcialteettkgnkglhlvi
alnyggyydilqatksivnkamnglldvedinknlfdqeleskcpnpdllirtggdqrvs
nfllwqlaytefyftktlfpdfgeedlkeaiinfqqrhrrfggh

SCOPe Domain Coordinates for d5hxpa_:

Click to download the PDB-style file with coordinates for d5hxpa_.
(The format of our PDB-style files is described here.)

Timeline for d5hxpa_:

  • d5hxpa_ appears in periodic updates to SCOPe 2.06 starting on 2017-04-05