SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Flaveria trinervia [TaxId: 4227]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2088020Superfamily c.1.12: Phosphoenolpyruvate/pyruvate domain [51621] (8 families) (S)
  5. 2088358Family c.1.12.0: automated matches [191427] (1 protein)
    not a true family
  6. 2088359Protein automated matches [190614] (15 species)
    not a true protein
  7. 2289255Species Flaveria trinervia [TaxId:4227] [332556] (2 PDB entries)

PDB entries in Species: Flaveria trinervia [TaxId: 4227]:

  1. Domain(s) for 5jvj:
    1. 2289256Domain d5jvjb3: 5jvj B:516-874 [332557]
      Other proteins in same PDB: d5jvja1, d5jvja2, d5jvjb1, d5jvjb2
      automated match to d1vbga1
      complexed with mg, pep
    2. 2289524Domain d5jvja3: 5jvj A:516-874 [332825]
      Other proteins in same PDB: d5jvja1, d5jvja2, d5jvjb1, d5jvjb2
      automated match to d1vbga1
      complexed with mg, pep
  2. Domain(s) for 5jvl:
    1. 2289262Domain d5jvla3: 5jvl A:516-874 [332563]
      Other proteins in same PDB: d5jvla1, d5jvla2, d5jvlc1, d5jvlc2, d5jvld1, d5jvld2
      automated match to d1vbga1
      complexed with 6nq, mg, pep
    2. 2289296Domain d5jvld3: 5jvl D:516-874 [332597]
      Other proteins in same PDB: d5jvla1, d5jvla2, d5jvlc1, d5jvlc2, d5jvld1, d5jvld2
      automated match to d1vbga1
      complexed with 6nq, mg, pep
    3. 2289355Domain d5jvlb1: 5jvl B:516-874 [332656]
      Other proteins in same PDB: d5jvla1, d5jvla2, d5jvlc1, d5jvlc2, d5jvld1, d5jvld2
      automated match to d1vbga1
      complexed with 6nq, mg, pep
    4. 2289397Domain d5jvlc3: 5jvl C:516-874 [332698]
      Other proteins in same PDB: d5jvla1, d5jvla2, d5jvlc1, d5jvlc2, d5jvld1, d5jvld2
      automated match to d1vbga1
      complexed with 6nq, mg, pep

More info for Species Flaveria trinervia [TaxId:4227] from c.1.12.0 automated matches

Timeline for Species Flaveria trinervia [TaxId:4227] from c.1.12.0 automated matches:

  • Species Flaveria trinervia [TaxId:4227] from c.1.12.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-04-06