SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Flaveria trinervia [TaxId: 4227]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2097883Fold c.8: The "swivelling" beta/beta/alpha domain [52008] (10 superfamilies)
    3 layers: b/b/a; the central sheet is parallel, and the other one is antiparallel; there are some variations in topology
    this domain is thought to be mobile in most multi-domain proteins known to contain it
  4. 2097884Superfamily c.8.1: Phosphohistidine domain [52009] (3 families) (S)
    contains barrel, closed, n=7, S=10
  5. 2097916Family c.8.1.0: automated matches [310665] (1 protein)
    not a true family
  6. 2097917Protein automated matches [310840] (3 species)
    not a true protein
  7. 2289253Species Flaveria trinervia [TaxId:4227] [332554] (2 PDB entries)

PDB entries in Species: Flaveria trinervia [TaxId: 4227]:

  1. Domain(s) for 5jvj:
    1. 2289254Domain d5jvjb2: 5jvj B:381-515 [332555]
      Other proteins in same PDB: d5jvja1, d5jvja3, d5jvjb1, d5jvjb3
      automated match to d1vbga2
      complexed with mg, pep
    2. 2289523Domain d5jvja2: 5jvj A:381-515 [332824]
      Other proteins in same PDB: d5jvja1, d5jvja3, d5jvjb1, d5jvjb3
      automated match to d1vbga2
      complexed with mg, pep
  2. Domain(s) for 5jvl:
    1. 2289261Domain d5jvla2: 5jvl A:381-515 [332562]
      Other proteins in same PDB: d5jvla1, d5jvla3, d5jvlb1, d5jvlc1, d5jvlc3, d5jvld1, d5jvld3
      automated match to d1vbga2
      complexed with 6nq, mg, pep
    2. 2289295Domain d5jvld2: 5jvl D:381-515 [332596]
      Other proteins in same PDB: d5jvla1, d5jvla3, d5jvlb1, d5jvlc1, d5jvlc3, d5jvld1, d5jvld3
      automated match to d1vbga2
      complexed with 6nq, mg, pep
    3. 2289396Domain d5jvlc2: 5jvl C:381-515 [332697]
      Other proteins in same PDB: d5jvla1, d5jvla3, d5jvlb1, d5jvlc1, d5jvlc3, d5jvld1, d5jvld3
      automated match to d1vbga2
      complexed with 6nq, mg, pep

More info for Species Flaveria trinervia [TaxId:4227] from c.8.1.0 automated matches

Timeline for Species Flaveria trinervia [TaxId:4227] from c.8.1.0 automated matches:

  • Species Flaveria trinervia [TaxId:4227] from c.8.1.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-04-05