SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5iyya1 (5iyy A:273-427)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2039145Fold b.18: Galactose-binding domain-like [49784] (1 superfamily)
    sandwich; 9 strands in 2 sheets; jelly-roll
  4. 2039146Superfamily b.18.1: Galactose-binding domain-like [49785] (35 families) (S)
  5. 2039169Family b.18.1.2: Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) [49791] (4 protein domains)
    automatically mapped to Pfam PF00754
  6. 2039170Protein B1 domain of neuropilin-1 [82016] (2 species)
  7. 2039171Species Human (Homo sapiens) [TaxId:9606] [82017] (9 PDB entries)
  8. 2289235Domain d5iyya1: 5iyy A:273-427 [332536]
    Other proteins in same PDB: d5iyya2, d5iyyb2
    automated match to d1kexa_
    complexed with r40

Details for d5iyya1

PDB Entry: 5iyy (more details), 1.6 Å

PDB Description: x-ray structure of neuropilin-1 b1 domain complexed with arg-4 ligand.
PDB Compounds: (A:) Neuropilin-1

SCOPe Domain Sequences for d5iyya1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5iyya1 b.18.1.2 (A:273-427) B1 domain of neuropilin-1 {Human (Homo sapiens) [TaxId: 9606]}
fkcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgedsyrewiqvdlgl
lrfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlfqgntnptdvvv
avfpkplitrfvrikpatwetgismrfevygckit

SCOPe Domain Coordinates for d5iyya1:

Click to download the PDB-style file with coordinates for d5iyya1.
(The format of our PDB-style files is described here.)

Timeline for d5iyya1:

  • d5iyya1 appears in periodic updates to SCOPe 2.06 starting on 2017-04-05

View in 3D
Domains from same chain:
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d5iyya2