Lineage for d5iyya1 (5iyy A:273-427)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2039145Fold b.18: Galactose-binding domain-like [49784] (1 superfamily)
    sandwich; 9 strands in 2 sheets; jelly-roll
  4. 2039146Superfamily b.18.1: Galactose-binding domain-like [49785] (35 families) (S)
  5. 2039169Family b.18.1.2: Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) [49791] (4 protein domains)
    automatically mapped to Pfam PF00754
  6. 2039170Protein B1 domain of neuropilin-1 [82016] (2 species)
  7. 2039171Species Human (Homo sapiens) [TaxId:9606] [82017] (9 PDB entries)
  8. 2289235Domain d5iyya1: 5iyy A:273-427 [332536]
    Other proteins in same PDB: d5iyya2, d5iyyb2
    automated match to d1kexa_
    complexed with r40

Details for d5iyya1

PDB Entry: 5iyy (more details), 1.6 Å

PDB Description: x-ray structure of neuropilin-1 b1 domain complexed with arg-4 ligand.
PDB Compounds: (A:) Neuropilin-1

SCOPe Domain Sequences for d5iyya1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5iyya1 b.18.1.2 (A:273-427) B1 domain of neuropilin-1 {Human (Homo sapiens) [TaxId: 9606]}
fkcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgedsyrewiqvdlgl
lrfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlfqgntnptdvvv
avfpkplitrfvrikpatwetgismrfevygckit

SCOPe Domain Coordinates for d5iyya1:

Click to download the PDB-style file with coordinates for d5iyya1.
(The format of our PDB-style files is described here.)

Timeline for d5iyya1:

  • d5iyya1 appears in periodic updates to SCOPe 2.06 starting on 2017-04-05

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Domains from same chain:
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d5iyya2