SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5hxtb_ (5hxt B:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2148252Fold c.101: Undecaprenyl diphosphate synthase [64004] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 342156
  4. 2148253Superfamily c.101.1: Undecaprenyl diphosphate synthase [64005] (2 families) (S)
    the sheet topology is similar to those of the N-terminal domain of phosphoglycerate kinase and carbamate kinase
  5. 2148319Family c.101.1.0: automated matches [191361] (1 protein)
    not a true family
  6. 2148320Protein automated matches [190431] (7 species)
    not a true protein
  7. 2289224Species Solanum habrochaites [TaxId:62890] [332525] (5 PDB entries)
  8. 2289226Domain d5hxtb_: 5hxt B: [332527]
    automated match to d4h8ea_
    complexed with dst, ipr, mg, o4b; mutant

Details for d5hxtb_

PDB Entry: 5hxt (more details), 2.15 Å

PDB Description: crystal structure of z,z-farnesyl diphosphate synthase (d71m, e75a and h103y mutants) complexed with ipp and dmspp
PDB Compounds: (B:) (2Z,6Z)-farnesyl diphosphate synthase, chloroplastic

SCOPe Domain Sequences for d5hxtb_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5hxtb_ c.101.1.0 (B:) automated matches {Solanum habrochaites [TaxId: 62890]}
mldealmpkhialimdgnrrwakdkgldvsegykhlfpklkeicdissklgiqvitafaf
stenwkrakgevdflmqmfeelydefsrsgvrvsiigcktdlpmtlqkcialteettkgn
kglhlvialnyggyydilqatksivnkamnglldvedinknlfdqeleskcpnpdllirt
ggdqrvsnfllwqlaytefyftktlfpdfgeedlkeaiinfqqrhr

SCOPe Domain Coordinates for d5hxtb_:

Click to download the PDB-style file with coordinates for d5hxtb_.
(The format of our PDB-style files is described here.)

Timeline for d5hxtb_:

  • d5hxtb_ appears in periodic updates to SCOPe 2.06 starting on 2017-04-05