SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Solanum habrochaites [TaxId: 62890]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2148252Fold c.101: Undecaprenyl diphosphate synthase [64004] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 342156
  4. 2148253Superfamily c.101.1: Undecaprenyl diphosphate synthase [64005] (2 families) (S)
    the sheet topology is similar to those of the N-terminal domain of phosphoglycerate kinase and carbamate kinase
  5. 2148319Family c.101.1.0: automated matches [191361] (1 protein)
    not a true family
  6. 2148320Protein automated matches [190431] (7 species)
    not a true protein
  7. 2289224Species Solanum habrochaites [TaxId:62890] [332525] (5 PDB entries)

PDB entries in Species: Solanum habrochaites [TaxId: 62890]:

  1. Domain(s) for 5hxn:
  2. Domain(s) for 5hxo:
  3. Domain(s) for 5hxp:
    1. 2289269Domain d5hxpc_: 5hxp C: [332570]
      automated match to d4h8ea_
      complexed with ipr, mg, o4b; mutant
    2. 2289288Domain d5hxpa_: 5hxp A: [332589]
      automated match to d4h8ea_
      complexed with ipr, mg, o4b; mutant
  4. Domain(s) for 5hxq:
    1. 2289234Domain d5hxqa_: 5hxq A: [332535]
      automated match to d4h8ea_
      complexed with dst, o4b; mutant
    2. 2289236Domain d5hxqc_: 5hxq C: [332537]
      automated match to d4h8ea_
      complexed with dst, o4b; mutant
  5. Domain(s) for 5hxt:
    1. 2289226Domain d5hxtb_: 5hxt B: [332527]
      automated match to d4h8ea_
      complexed with dst, ipr, mg, o4b; mutant
    2. 2289270Domain d5hxta_: 5hxt A: [332571]
      automated match to d4h8ea_
      complexed with dst, ipr, mg, o4b; mutant

More info for Species Solanum habrochaites [TaxId:62890] from c.101.1.0 automated matches

Timeline for Species Solanum habrochaites [TaxId:62890] from c.101.1.0 automated matches:

  • Species Solanum habrochaites [TaxId:62890] from c.101.1.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-04-05