SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Wolinella succinogenes [TaxId: 273121]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2142620Fold c.88: Glutaminase/Asparaginase [53773] (1 superfamily)
    consists of two non-similar alpha/beta domains, 3 layers (a/b/a) each
    Domain 1 has mixed beta-sheet of 6 strands, order 213456, strand 6 is antiparallel to the rest; left-handed crossover connection between strands 4 and 5
    Domain 2 has parallel beta-sheet of 4 strands, order 1234
  4. 2142621Superfamily c.88.1: Glutaminase/Asparaginase [53774] (2 families) (S)
  5. 2142622Family c.88.1.1: Glutaminase/Asparaginase [53775] (4 protein domains)
    automatically mapped to Pfam PF00710
  6. 2142623Protein Asparaginase type II [53776] (5 species)
  7. 2289052Species Wolinella succinogenes [TaxId:273121] [332353] (4 PDB entries)

PDB entries in Species: Wolinella succinogenes [TaxId: 273121]:

  1. Domain(s) for 5k3o:
    1. 2289053Domain d5k3ob_: 5k3o B: [332354]
      automated match to d1wsaa_
      complexed with asp
    2. 2289056Domain d5k3od_: 5k3o D: [332357]
      automated match to d1wsaa_
      complexed with asp
    3. 2289120Domain d5k3oa_: 5k3o A: [332421]
      automated match to d1wsaa_
      complexed with asp
    4. 2289137Domain d5k3oc_: 5k3o C: [332438]
      automated match to d1wsaa_
      complexed with asp
  2. Domain(s) for 5k45:
    1. 2289069Domain d5k45a_: 5k45 A: [332370]
      automated match to d1wsaa_
      complexed with glu
    2. 2289097Domain d5k45b_: 5k45 B: [332398]
      automated match to d1wsaa_
      complexed with glu
    3. 2289105Domain d5k45d_: 5k45 D: [332406]
      automated match to d1wsaa_
      complexed with glu
    4. 2289222Domain d5k45c_: 5k45 C: [332523]
      automated match to d1wsaa_
      complexed with glu
  3. Domain(s) for 5k4g:
    1. 2289122Domain d5k4ga_: 5k4g A: [332423]
      Other proteins in same PDB: d5k4gb_, d5k4gd_
      automated match to d1wsaa_
      complexed with asp
    2. 2289221Domain d5k4gc_: 5k4g C: [332522]
      Other proteins in same PDB: d5k4gb_, d5k4gd_
      automated match to d1wsaa_
      complexed with asp
  4. Domain(s) for 5k4h:
    1. 2289054Domain d5k4hb_: 5k4h B: [332355]
      automated match to d1wsaa_
      complexed with glu
    2. 2289055Domain d5k4hf_: 5k4h F: [332356]
      automated match to d1wsaa_
      complexed with glu
    3. 2289063Domain d5k4hc_: 5k4h C: [332364]
      automated match to d1wsaa_
      complexed with glu
    4. 2289065Domain d5k4hh_: 5k4h H: [332366]
      automated match to d1wsaa_
      complexed with glu
    5. 2289091Domain d5k4hd_: 5k4h D: [332392]
      automated match to d1wsaa_
      complexed with glu
    6. 2289123Domain d5k4hg_: 5k4h G: [332424]
      automated match to d1wsaa_
      complexed with glu
    7. 2289138Domain d5k4he_: 5k4h E: [332439]
      automated match to d1wsaa_
      complexed with glu
    8. 2289179Domain d5k4ha_: 5k4h A: [332480]
      automated match to d1wsaa_
      complexed with glu

More info for Species Wolinella succinogenes [TaxId:273121] from c.88.1.1 Asparaginase type II

Timeline for Species Wolinella succinogenes [TaxId:273121] from c.88.1.1 Asparaginase type II:

  • Species Wolinella succinogenes [TaxId:273121] from c.88.1.1 Asparaginase type II appears in periodic updates to SCOPe 2.06 starting on 2017-03-30