SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Bacillus subtilis [TaxId: 224308]

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2180205Fold d.79: Bacillus chorismate mutase-like [55297] (9 superfamilies)
    core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest
  4. 2180995Superfamily d.79.5: IpsF-like [69765] (2 families) (S)
    forms trimers with three closely packed beta-sheets; possible link between the YjgF-like (d.79.1) and 4'-phosphopantetheinyl transferase superfamilies (d.150.1)
  5. 2180996Family d.79.5.1: IpsF-like [69766] (3 protein domains)
    automatically mapped to Pfam PF02542
  6. 2181094Protein automated matches [190985] (4 species)
    not a true protein
  7. 2289034Species Bacillus subtilis [TaxId:224308] [332335] (2 PDB entries)

PDB entries in Species: Bacillus subtilis [TaxId: 224308]:

  1. Domain(s) for 5iwx:
    1. 2289093Domain d5iwxf_: 5iwx F: [332394]
      automated match to d1t0aa_
      complexed with mg
    2. 2289147Domain d5iwxa_: 5iwx A: [332448]
      automated match to d1t0aa_
      complexed with mg
    3. 2289149Domain d5iwxc_: 5iwx C: [332450]
      automated match to d1t0aa_
      complexed with mg
    4. 2289161Domain d5iwxd_: 5iwx D: [332462]
      automated match to d1t0aa_
      complexed with mg
    5. 2289164Domain d5iwxe_: 5iwx E: [332465]
      automated match to d1t0aa_
      complexed with mg
    6. 2289184Domain d5iwxb_: 5iwx B: [332485]
      automated match to d1t0aa_
      complexed with mg
  2. Domain(s) for 5iwy:
    1. 2289035Domain d5iwyf_: 5iwy F: [332336]
      automated match to d1t0aa_
      complexed with c5p, mg
    2. 2289064Domain d5iwye_: 5iwy E: [332365]
      automated match to d1t0aa_
      complexed with c5p, mg
    3. 2289066Domain d5iwya_: 5iwy A: [332367]
      automated match to d1t0aa_
      complexed with c5p, mg
    4. 2289143Domain d5iwyc_: 5iwy C: [332444]
      automated match to d1t0aa_
      complexed with c5p, mg
    5. 2289183Domain d5iwyb_: 5iwy B: [332484]
      automated match to d1t0aa_
      complexed with c5p, mg
    6. 2289217Domain d5iwyd_: 5iwy D: [332518]
      automated match to d1t0aa_
      complexed with c5p, mg

More info for Species Bacillus subtilis [TaxId:224308] from d.79.5.1 automated matches

Timeline for Species Bacillus subtilis [TaxId:224308] from d.79.5.1 automated matches:

  • Species Bacillus subtilis [TaxId:224308] from d.79.5.1 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-03-30