SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5uwrb_ (5uwr B:)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2061576Fold b.55: PH domain-like barrel [50728] (2 superfamilies)
    barrel, partly opened; n*=6, S*=12; meander; capped by an alpha-helix
  4. 2061577Superfamily b.55.1: PH domain-like [50729] (14 families) (S)
  5. 2062158Family b.55.1.0: automated matches [191311] (1 protein)
    not a true family
  6. 2062159Protein automated matches [190052] (6 species)
    not a true protein
  7. 2062160Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [194506] (31 PDB entries)
  8. 2288974Domain d5uwrb_: 5uwr B: [332275]
    Other proteins in same PDB: d5uwra_
    automated match to d4wvfb_
    complexed with cl, gnp, gol, mg

Details for d5uwrb_

PDB Entry: 5uwr (more details), 2.24 Å

PDB Description: crystal structure of cdc7 nes peptide (extended) in complex with crm1- ran-ranbp1
PDB Compounds: (B:) Ran-specific GTPase-activating protein 1

SCOPe Domain Sequences for d5uwrb_:

Sequence, based on SEQRES records: (download)

>d5uwrb_ b.55.1.0 (B:) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
hfepvvhlekvdvktmeedeevlykvraklfrfdadakewkergtgdckflknkktnkvr
ilmrrdktlkicanhiiapeytlkpnvgsdrswvyactadiaegeaeaftfairfgsken
adkfkeefekaqeinkk

Sequence, based on observed residues (ATOM records): (download)

>d5uwrb_ b.55.1.0 (B:) automated matches {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
hfepvmeedeevlykvraklfrfdadakewkergtgdckflknkktnkvrilmrrdktlk
icanhiiapeytlkpnvgsdrswvyactadiaegeaeaftfairfgskenadkfkeefek
aqeinkk

SCOPe Domain Coordinates for d5uwrb_:

Click to download the PDB-style file with coordinates for d5uwrb_.
(The format of our PDB-style files is described here.)

Timeline for d5uwrb_:

  • d5uwrb_ appears in periodic updates to SCOPe 2.06 starting on 2017-03-23