SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5u3va_ (5u3v A:)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2008476Fold a.123: Nuclear receptor ligand-binding domain [48507] (1 superfamily)
    multihelical; 3 layers or orthogonally packed helices
  4. 2008477Superfamily a.123.1: Nuclear receptor ligand-binding domain [48508] (2 families) (S)
  5. 2008478Family a.123.1.1: Nuclear receptor ligand-binding domain [48509] (34 protein domains)
  6. 2009403Protein automated matches [190059] (14 species)
    not a true protein
  7. 2009425Species Human (Homo sapiens) [TaxId:9606] [187214] (167 PDB entries)
  8. 2288862Domain d5u3va_: 5u3v A: [332163]
    automated match to d2p4ya_
    complexed with 7ty, b7g, peg, pgo

Details for d5u3va_

PDB Entry: 5u3v (more details), 1.84 Å

PDB Description: human ppardelta ligand-binding domain in complexed with specific agonist 6
PDB Compounds: (A:) Peroxisome proliferator-activated receptor delta

SCOPe Domain Sequences for d5u3va_:

Sequence, based on SEQRES records: (download)

>d5u3va_ a.123.1.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
adlkafskhiynaylknfnmtkkkarsiltgkashtapfvihdietlwqaekglvwkqlv
nglppykeisvhvfyrcqcttvetvreltefaksipsfsslflndqvtllkygvheaifa
mlasivnkdgllvangsgfvtreflrslrkpfsdiiepkfefavkfnalelddsdlalfi
aaiilcgdrpglmnvprveaiqdtilralefhlqanhpdaqylfpkllqkmadlrqlvte
haqmmqrikktetetslhpllqeiykdmy

Sequence, based on observed residues (ATOM records): (download)

>d5u3va_ a.123.1.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
adlkafskhiynaylknfnmtkkkarsiltapfvihdietlwqaekglvwkqlvnglppy
keisvhvfyrcqcttvetvreltefaksipsfsslflndqvtllkygvheaifamlasiv
nkdgllvangsgfvtreflrslrkpfsdiiepkfefavkfnalelddsdlalfiaaiilc
gdrpglmnvprveaiqdtilralefhlqanhpdaqylfpkllqkmadlrqlvtehaqmmq
rikktetetslhpllqeiykdmy

SCOPe Domain Coordinates for d5u3va_:

Click to download the PDB-style file with coordinates for d5u3va_.
(The format of our PDB-style files is described here.)

Timeline for d5u3va_:

  • d5u3va_ appears in periodic updates to SCOPe 2.06 starting on 2017-03-23