Lineage for d5u40b_ (5u40 B:)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2008476Fold a.123: Nuclear receptor ligand-binding domain [48507] (1 superfamily)
    multihelical; 3 layers or orthogonally packed helices
  4. 2008477Superfamily a.123.1: Nuclear receptor ligand-binding domain [48508] (2 families) (S)
  5. 2008478Family a.123.1.1: Nuclear receptor ligand-binding domain [48509] (34 protein domains)
  6. 2009403Protein automated matches [190059] (14 species)
    not a true protein
  7. 2009425Species Human (Homo sapiens) [TaxId:9606] [187214] (172 PDB entries)
  8. 2288861Domain d5u40b_: 5u40 B: [332162]
    automated match to d2p4ya_
    complexed with 7ud, b7g, peg, pgo

Details for d5u40b_

PDB Entry: 5u40 (more details), 2 Å

PDB Description: human ppardelta ligand-binding domain in complexed with specific agonist 15
PDB Compounds: (B:) Peroxisome proliferator-activated receptor delta

SCOPe Domain Sequences for d5u40b_:

Sequence, based on SEQRES records: (download)

>d5u40b_ a.123.1.1 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
dlkafskhiynaylknfnmtkkkarsiltgkashtapfvihdietlwqaekglvwkqlvn
glppykeisvhvfyrcqcttvetvreltefaksipsfsslflndqvtllkygvheaifam
lasivnkdgllvangsgfvtreflrslrkpfsdiiepkfefavkfnalelddsdlalfia
aiilcgdrpglmnvprveaiqdtilralefhlqanhpdaqylfpkllqkmadlrqlvteh
aqmmqrikktetetslhpllqeiyk

Sequence, based on observed residues (ATOM records): (download)

>d5u40b_ a.123.1.1 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
dlkafskhiynaylknfnmtkkkarsiltgkashtapfvihdietlwqaekglvwlppyk
eisvhvfyrcqcttvetvreltefaksipsfsslflndqvtllkygvheaifamlasivn
kdgllvangsgfvtreflrslrkpfsdiiepkfefavkfnalelddsdlalfiaaiilcg
drpglmnvprveaiqdtilralefhlqanhpdaqylfpkllqkmadlrqlvtehaqmmqr
ikktetetslhpllqeiyk

SCOPe Domain Coordinates for d5u40b_:

Click to download the PDB-style file with coordinates for d5u40b_.
(The format of our PDB-style files is described here.)

Timeline for d5u40b_:

  • d5u40b_ appears in periodic updates to SCOPe 2.06 starting on 2017-03-23