SCOPe 2.06: Domain d5u41b_: 5u41 B:

Lineage for d5u41b_ (5u41 B:)

1. Root: SCOPe 2.06

2. Class a: All alpha proteins [46456] (289 folds)

3. Fold a.123: Nuclear receptor ligand-binding domain [48507] (1 superfamily)
   multihelical; 3 layers or orthogonally packed helices

4. Superfamily a.123.1: Nuclear receptor ligand-binding domain [48508] (2 families)

5. Family a.123.1.1: Nuclear receptor ligand-binding domain [48509] (34 proteins)

6. Protein automated matches [190059] (14 species)
   not a true protein

7. Species Human (Homo sapiens) [TaxId:9606] [187214] (173 PDB entries)

8. Domain d5u41b_: 5u41 B: [332154]
   automated match to d2p4ya_
   complexed with 7ug, b7g, k, peg, pgo

Details for d5u41b_

PDB Entry: 5u41, 1.9 Å

PDB Description: human ppardelta ligand-binding domain in complexed with specific agonist 16

PDB Compounds: (B:) Peroxisome proliferator-activated receptor delta

SCOPe Domain Sequences for d5u41b_:

Sequence, based on SEQRES records:

>d5u41b_ a.123.1.1 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
adlkafskhiynaylknfnmtkkkarsiltgkashtapfvihdietlwqaekglvwkqlv
nglppykeisvhvfyrcqcttvetvreltefaksipsfsslflndqvtllkygvheaifa
mlasivnkdgllvangsgfvtreflrslrkpfsdiiepkfefavkfnalelddsdlalfi
aaiilcgdrpglmnvprveaiqdtilralefhlqanhpdaqylfpkllqkmadlrqlvte
haqmmqrikktetetslhpllqeiykd

Sequence, based on observed residues (ATOM records):

>d5u41b_ a.123.1.1 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
adlkafskhiynaylknfnmtkkkarsiltapfvihdietlwqaekglvwkqlvnglppy
keisvhvfyrcqcttvetvreltefaksipsfsslflndqvtllkygvheaifamlasiv
nkdgllvangsgfvtreflrslrkpfsdiiepkfefavkfnalelddsdlalfiaaiilc
gdrpglmnvprveaiqdtilralefhlqanhpdaqylfpkllqkmadlrqlvtehaqmmq
rikktetetslhpllqeiykd

Timeline for d5u41b_:

• d5u41b_ is new in SCOPe 2.06-stable
  
• d5u41b_ appears in SCOPe 2.07
  
• d5u41b_ appears in the current release, SCOPe 2.08