SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5jorc2 (5jor C:108-213)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2020524Family b.1.1.2: C1 set domains (antibody constant domain-like) [48942] (24 protein domains)
  6. 2024392Protein automated matches [190374] (14 species)
    not a true protein
  7. 2025381Species Mouse (Mus musculus) [TaxId:10090] [224855] (489 PDB entries)
  8. 2288784Domain d5jorc2: 5jor C:108-213 [332085]
    Other proteins in same PDB: d5jora1, d5jorc1, d5jore1, d5jorl1
    automated match to d1tqbc2
    complexed with 1pe, gol, so4

Details for d5jorc2

PDB Entry: 5jor (more details), 2.21 Å

PDB Description: crystal structure of unbound anti-glycan antibody fab14.22 at 2.2 a
PDB Compounds: (C:) Fab 14.22 light chain

SCOPe Domain Sequences for d5jorc2:

Sequence; same for both SEQRES and ATOM records: (download)

>d5jorc2 b.1.1.2 (C:108-213) automated matches {Mouse (Mus musculus) [TaxId: 10090]}
radaaptvsifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqd
skdstysmsstltltkdeyerhnsytceathktstspivksfnrne

SCOPe Domain Coordinates for d5jorc2:

Click to download the PDB-style file with coordinates for d5jorc2.
(The format of our PDB-style files is described here.)

Timeline for d5jorc2:

  • d5jorc2 appears in periodic updates to SCOPe 2.06 starting on 2017-03-23