SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5ixgd_ (5ixg D:)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2063610Fold b.61: Streptavidin-like [50875] (8 superfamilies)
    barrel, closed; n=8, S=10; meander
  4. 2064238Superfamily b.61.6: YceI-like [101874] (2 families) (S)
  5. 2064250Family b.61.6.0: automated matches [191627] (1 protein)
    not a true family
  6. 2064251Protein automated matches [191150] (2 species)
    not a true protein
  7. 2288361Species Burkholderia cenocepacia [TaxId:350702] [331662] (1 PDB entry)
  8. 2288413Domain d5ixgd_: 5ixg D: [331714]
    automated match to d1y0ga_
    complexed with otp, peg

Details for d5ixgd_

PDB Entry: 5ixg (more details), 1.6 Å

PDB Description: crystal structure of burkholderia cenocepacia bcnb
PDB Compounds: (D:) YceI

SCOPe Domain Sequences for d5ixgd_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5ixgd_ b.61.6.0 (D:) automated matches {Burkholderia cenocepacia [TaxId: 350702]}
satyqfdpshtypsfeadhfgglsvwrgkfdkssgtvtldraaktgtvdvttdiasihtg
sakldehlqtaeffdaakfpqanykgtikfdgdkpvsvvgnltlhgvtkpltlkidsfkc
mphpmlkrevcgvdavgefsrddfgldygkqygfkmktkllitaeavkq

SCOPe Domain Coordinates for d5ixgd_:

Click to download the PDB-style file with coordinates for d5ixgd_.
(The format of our PDB-style files is described here.)

Timeline for d5ixgd_:

  • d5ixgd_ appears in periodic updates to SCOPe 2.06 starting on 2017-03-23