SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5lhaa_ (5lha A:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2130990Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
    main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
  4. 2130991Superfamily c.67.1: PLP-dependent transferases [53383] (10 families) (S)
  5. 2132229Family c.67.1.0: automated matches [191328] (1 protein)
    not a true family
  6. 2132230Protein automated matches [190151] (111 species)
    not a true protein
  7. 2272179Species Pseudomonas sp. [TaxId:306] [315480] (5 PDB entries)
  8. 2288394Domain d5lhaa_: 5lha A: [331695]
    automated match to d3drda_
    complexed with pmp

Details for d5lhaa_

PDB Entry: 5lha (more details), 1.89 Å

PDB Description: amine transaminase crystal structure from an uncultivated pseudomonas species in the pmp-bound form
PDB Compounds: (A:) omega transaminase

SCOPe Domain Sequences for d5lhaa_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5lhaa_ c.67.1.0 (A:) automated matches {Pseudomonas sp. [TaxId: 306]}
ekyknaekkfwhpmgssaaphrdktlviargdgnyitdidgqrmldgvgglwnvnighnr
asvkaaiaaqldelayyqtfdgiahprvfdlaerltgmfaqermarvlfssggsdaveta
lkmarqywiasgepgrtrflslrngyhgvhmggtsvggngvyhynhgqllagchlldtpw
lyrnpwdcrdpqaltahcirqleeqiallgaqtiaaliaepvqgaggvivppadywprlr
evcdrhgilliadevvtgfgrsgcmlgsrgwgvapdilclakgitagyiplgatlfnqri
adaiengqgfshmimhgytysghptacaaalavldiveaedlpgnaakvgaqlleqlqpl
veryavvgevrgkglmialdlvsdkrtrqpldpaagqpsriadearragvlvrpignkii
lsppltltrdeaglmvsaleaafarcg

SCOPe Domain Coordinates for d5lhaa_:

Click to download the PDB-style file with coordinates for d5lhaa_.
(The format of our PDB-style files is described here.)

Timeline for d5lhaa_:

  • d5lhaa_ appears in periodic updates to SCOPe 2.06 starting on 2017-03-23