SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5jjqb_ (5jjq B:)

  1. Root: SCOPe 2.06
  2. 2217451Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)
  3. 2222543Fold e.23: Acetyl-CoA synthetase-like [56800] (1 superfamily)
    4 domains: (1&2) duplication: share the same alpha/beta fold; (3) beta-barrel; (4) alpha+beta
  4. 2222544Superfamily e.23.1: Acetyl-CoA synthetase-like [56801] (2 families) (S)
  5. 2222620Family e.23.1.0: automated matches [191594] (1 protein)
    not a true family
  6. 2222621Protein automated matches [191083] (22 species)
    not a true protein
  7. 2288323Species Streptomyces sp. [TaxId:1265536] [331624] (1 PDB entry)
  8. 2288365Domain d5jjqb_: 5jjq B: [331666]
    Other proteins in same PDB: d5jjqd2
    automated match to d4d57a_
    complexed with 6l1, cl

Details for d5jjqb_

PDB Entry: 5jjq (more details), 2.6 Å

PDB Description: crystal structure of idnl1
PDB Compounds: (B:) AMP-dependent synthetase and ligase

SCOPe Domain Sequences for d5jjqb_:

Sequence, based on SEQRES records: (download)

>d5jjqb_ e.23.1.0 (B:) automated matches {Streptomyces sp. [TaxId: 1265536]}
vftlaqnpverlheflltgarltpekpavlelsgtepgyvsyrqlanraesyaaalgglg
ldigdrvvlesdtsasaiaallacsslglpfvpvtpetpakrllavvdtvspalylqaeg
grreglpesvgtgrfgpgglvieraprpgrgfrrevapadpaymvftsgstgrpkgvvms
hrailsfyrgmlsqgivgpesrvastapfqfdfslldiglalgsgatvvpvprallrwpr
rfvrflrdseatqvngapsiwrgalrheadelaalggrirgvlfsgepfplpevralqqa
lplarivncfgstesvaasftdvprpvpdgltklsighahpgaemmlldddgvpvtepgv
tghihlrsgslftgywgdpeataralvpdptnpmtgqtvfrtgdlahrdatgelyfdgra
dnqvkirgnrvelteverrvaeftgvaaasavllpvaesdpvlavfvelspgaefdemel
gafcleelpdymapqrihvldalp

Sequence, based on observed residues (ATOM records): (download)

>d5jjqb_ e.23.1.0 (B:) automated matches {Streptomyces sp. [TaxId: 1265536]}
vftlaqnpverlheflltgarltpekpavlegyvsyrqlanraesyaaalgglgldigdr
vvlesdtsasaiaallacsslglpfvpvtpetpakrllavvdtvspalylqaeggrregl
pesvgtgrfgpgglvieraprpgrgfrrevapadpaymvfpkgvvmshrailsfyrgmls
qgivgpesrvastapfqfdfslldiglalgsgatvvpvprallrwprrfvrflrdseatq
vngapsiwrgalrheadelaalggrirgvlfsgepfplpevralqqalplarivncfgst
esvaasftdvprpvpdgltklsighahpgaemmlldddgvpvtepgvtghihlrsgslft
gywgdpeataralvpdptnpmtgqtvfrtgdlahrdatgelyfdgradnqvkirgnrvel
teverrvaeftgvaaasavllpdpvlavfvelspgaefdemelgafcleelpdymapqri
hvldalp

SCOPe Domain Coordinates for d5jjqb_:

Click to download the PDB-style file with coordinates for d5jjqb_.
(The format of our PDB-style files is described here.)

Timeline for d5jjqb_:

  • d5jjqb_ appears in periodic updates to SCOPe 2.06 starting on 2017-03-23