SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5x0qb1 (5x0q B:86-301)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2144291Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 2144292Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 2145531Family c.94.1.0: automated matches [191309] (1 protein)
    not a true family
  6. 2145532Protein automated matches [190039] (136 species)
    not a true protein
  7. 2287663Species Vibrio vulnificus [TaxId:672] [330964] (4 PDB entries)
  8. 2288194Domain d5x0qb1: 5x0q B:86-301 [331495]
    Other proteins in same PDB: d5x0qa2, d5x0qb2
    automated match to d1i6aa_
    complexed with cit, cl

Details for d5x0qb1

PDB Entry: 5x0q (more details), 1.55 Å

PDB Description: oxyr2 e204g variant (cl-bound) from vibrio vulnificus
PDB Compounds: (B:) LysR family transcriptional regulator

SCOPe Domain Sequences for d5x0qb1:

Sequence, based on SEQRES records: (download)

>d5x0qb1 c.94.1.0 (B:86-301) automated matches {Vibrio vulnificus [TaxId: 672]}
elgslcqgdsmqgqlklgciptiapfllcdlvqeinqrfpqlnlllredtttnlltalrh
geldvlilalpveidgmesrvvgqdpfkmvisrhqagaikvpikyddlpdesvfllekgh
cltehavsackltdkekinpfsatslhtlvqmvanglgttfipqmaidhglldnqnlvvi
eppgqqayrdiglvwrpsssrsktfnqlaevvsell

Sequence, based on observed residues (ATOM records): (download)

>d5x0qb1 c.94.1.0 (B:86-301) automated matches {Vibrio vulnificus [TaxId: 672]}
elsmqgqlklgciptiapfllcdlvqeinqrfpqlnlllredtttnlltalrhgeldvli
lalpveidgmesrvvgqdpfkmvisrhqagaikvpikyddlpdesvfllekghcltehav
sackltdkekinpfsatslhtlvqmvanglgttfipqmaidhglldnqnlvvieppgqqa
yrdiglvwrpsssrsktfnqlaevvsell

SCOPe Domain Coordinates for d5x0qb1:

Click to download the PDB-style file with coordinates for d5x0qb1.
(The format of our PDB-style files is described here.)

Timeline for d5x0qb1:

  • d5x0qb1 appears in periodic updates to SCOPe 2.06 starting on 2017-03-16

View in 3D
Domains from same chain:
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d5x0qb2