SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Yersinia pestis [TaxId: 632]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2084338Superfamily c.1.9: Metallo-dependent hydrolases [51556] (19 families) (S)
    the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
    has transition metal ions bound inside the barrel
  5. 2084960Family c.1.9.0: automated matches [191327] (1 protein)
    not a true family
  6. 2084961Protein automated matches [190150] (24 species)
    not a true protein
  7. 2288113Species Yersinia pestis [TaxId:632] [331414] (1 PDB entry)

PDB entry in Species: Yersinia pestis [TaxId: 632]:

More info for Species Yersinia pestis [TaxId:632] from c.1.9.0 automated matches

Timeline for Species Yersinia pestis [TaxId:632] from c.1.9.0 automated matches:

  • Species Yersinia pestis [TaxId:632] from c.1.9.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-03-16